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Resources for Meloidogyne incognita genome

Meloidogyne javanica

  • Genome Assembly

The Meloidogyne javanica genome assembly has been published in 2017 in PLoS Genetics (Blanc-Mathieu et al. 2017).

The assembly has been deposited to the EMBL-EBI European Nucleotide Archive (ENA), and is available for download at the following link:

http://www.ebi.ac.uk/ena/data/view/CEWN01000000

 

  • Predicted mRNA mRNA/CDS/Protein

mRNA/CDS/Protein sequences were predicted using Eugene software. These sequences are avalaible for download.

 

  • Predicted mRNA

Download mRNA fasta:

 

  • Predicted CDS

Download CDS fasta:

 

  • Predicted protein

Download protein fasta:

 

  • RNAseq data

Mixed Meloidogyne javanica RNAseq data from eggs and infective juveniles (J2) have been used to help predict gene models in (Blanc-Mathieu et al. 2017).

The data is available for download here:

http://www.ebi.ac.uk/ena/data/search?query=ERP009884