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MIA Paris

Stéphane Robin

Stéphane Robin

Position

Senior researcher (DR) at the Institut National de la Recherche Agronomique (INRA) 
Joint research unit (UMR) 518 AgroParisTech / INRA, Applied Mathematics and Computer Sciences 
16 rue Claude Bernard, F - 75 231 Paris Cedex 05 
(3)(0)1 44 08 72 07, fax: (3)(0)1 44 08 16 66 
robin@agroparistech.fr

  • Research groups:
    • Molecular bioinformatics (BIM)
    • Statistics and ecology (EcoStat)
    • Algorithmic Issues for Inference in Graphical Models (AIGM)
  • Associate editor:
  • Teachings: 
    • Master2 Mathématiques pour les Sciences du Vivant (MathSV), see lecture notes below
    • UE Modélisation statistique et analyse de données biologiques (ModelStat)

PhD

A PhD proposal on 'Inferring sparse networks based on incomplete data' has been submitted to the Ecole Doctorale de Mathématique Hadamard (EDMH).Candidates should directly register on the website of EDMH.

Projects

  • ABS4NGS: Algorithmic, Bioinformatic and Software solutions for the analysis of Next Generation Sequencing data. 2012-2016 
  • EPIREG: Identification of chromosomal regions activated or inactivated by epigenetic mechanisms
  • Amaizing: Breeding for economically and environmentally sustainable maize varieties: an integrated approach from genomics to selection. 2011-2018 
  • HydroGen: Comparative Metagenomic for Measuring Biodiversity, Application to Ocean Life Studie. 2014-2018

Research interests

  • Statistical Methodology
    • Models with hidden variables (mixtures, HMM, ….)
    • Change-point detection
    • Random graph models
    • Variational approximations
    • Network inference
  • Statistical Applications in Molecular Biology
    • Motif in DNA sequences
    • Transcriptiome analysis
    • Copy number variations in DNA
    • Interaction networks
    • Metagenomics
    • Ecological network

Preprints:

  • Exact and approximate inference in graphical models: variable elimination and beyond arxiv:1506.08544
  • Bayesian Inference of Graphical Model Structures Using Trees arxiv:1504.02723
  • SegCorr: a statistical procedure for the detection of genomic regions of correlated expression arxiv:1504.05738
  • A factor model approach for the joint segmentation with between-series correlation arxiv:1505.05660
  • A degree-based goodness-of-fit test for heterogeneous random graph models arxiv:1507.08140

Talks

Teachings

Les publications de Stéphane Robin

Meetings

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