Articles à comité de lecture
ARTICLES 2022
Barouillet, C; Vasselon, V; Keck, F; Millet, L; Etienne, D; Galop, D; Rius, D; Domaizon, I. Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes SCIENTIFIC REPORTS 2022 12 1 7899 10.1038/s41598-022-12041-7 http://dx.doi.org/10.1038/s41598-022-12041-7
Vagnon, C; Bazin, S; Cattaneo, F; Goulon, C; Guillard, J; Frossard, V. The opportunistic trophic behaviour of the European catfish (Silurus glanis) in a recently colonised large peri-alpine lake ECOLOGY OF FRESHWATER FISH 2022 31 4 650 661 10.1111/eff.12659 http://dx.doi.org/10.1111/eff.12659
Vagnon, C; Cattaneo, F; Goulon, C; Guillard, J; Frossard, V. The vulnerability of whitefish (Coregonus lavaretus) to the invasive European catfish (Silurus glanis) in a large peri-Alpine lake CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES 10.1139/cjfas-2021-0310 http://dx.doi.org/10.1139/cjfas-2021-0310
Vagnon, C; Rohr, RP; Bersier, LF; Cattaneo, F; Guillard, J; Frossard, V. Combining food web theory and population dynamics to assess the impact of invasive species FRONTIERS IN ECOLOGY AND EVOLUTION 2022 10 913954 10.3389/fevo.2022.913954 http://dx.doi.org/10.3389/fevo.2022.913954
Vagnon, C; Cattaneo, F; Guillard, J; Frossard, V Inferring the trophic attributes and consequences of co-occurring lake invaders using an allometric niche model BIOLOGICAL INVASIONS 2022 24 6 1661 1676 10.1007/s10530-022-02745-2 http://dx.doi.org/10.1007/s10530-022-02745-2
Rautureau, C; Goulon, C; Guillard, J In situ TS detections using two generations of echo-sounder, EK60 and EK80: the continuity of fishery acoustic data in lakes FISHERIES RESEARCH 2022 249 106237 10.1016/j.fishres.2022.106237 http://dx.doi.org/10.1016/j.fishres.2022.106237
Hervé, A; I, Domaizon; J- Baudoin ; T Dejean; P Gibert; P Jean; T Peroux; J-C Raymond; A Valentini; M Vautier; et al. "Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes" PLOS ONE 2022 17 8 e0272660 10.1371/journal.pone.0272660 https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0272660
Ezzedine, JA; Scheifler, M; Desdevises, Y; Jacquet, S. A Comparative Study of the Dynamics and Diversity of Bdellovibrio and Like Organisms in Lakes Annecy and Geneva MICROORGANISMS 2022 10 101960 10.3390/microorganisms10101960 http://dx.doi.org/10.3390/microorganisms10101960
Rivera, S; Rimet F; Vasselon V ; Vautier M ; Domaizon I ; Bouchez A. Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects MOLECULAR ECOLOGY RESSOURCES 2022 22 4 1140 1453 10.1111/1755-0998.13568 https://doi.org/10.1111/1755-0998.13568
Deyle, ER; Boufard, D, Frosard, V; Schewfel, R; Melak, J; Sugihara G. A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures PNAS JUNE 2022 119 26 e2102466119 10.1073/pnas.2102466119 https://doi.org/10.1073/pnas.2102466119
Blanluet, A; Gastauer, S; Cattaneo, F; Goulon, C; Grimardias, D; Guillard, J. Discrimination between schools and submerged trees in reservoirs: a preliminary approach using narrowband and broadband acoustics CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES 2022 79 5 738 748 10.1139/cjfas-2021-0087 http://dx.doi.org/10.1139/cjfas-2021-0087
Salmaso, N; Vasselon, V; Rimet, F; Vautier, M; Elersek, T; Boscaini, A; Donati, C; Moretto, M; Pindo, M; Riccioni, G; Stefani, E; Capelli, C; Lepori, F; Kurmayer, R; Mischke, U; Klemencic, AK; Novak, K; Greco, C; Franzini, G; Fusato, G; Giacomazzi, F; Lea, A; Menegon, S; Zampieri, C; Macor, A; Virgilio, D; Zanut, E; Zorza, R; Buzzi, F; Domaizon, I DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region SCIENCE OF THE TOTAL ENVIRONMENT AUG 15 2022 834 155175 10.1016/j.scitotenv.2022.155175 http://dx.doi.org/10.1016/j.scitotenv.2022.155175
Haltiner, L; Zhang, H; Anneville, O; De Ventura, L; DeWeber, JT; Hesselschwerdt, J; Koss, M; Rasconi, S; Rothhaupt, KO; Schick, R; Schmidt, B; Spaak, P; Teiber-Slessegger, P; Wessels, M; Zeh, M; Dennis, SR. The distribution and spread of quagga mussels in perialpine lakes north of the Alps AQUATIC INVASIONS 2022 17 2 153 173 10.3391/ai.2022.17.2.02 http://dx.doi.org/10.3391/ai.2022.17.2.02
Chang, CW; Miki, T; Ye, H; Souissi, S; Adrian, R; Anneville, O; Agasild, H; Ban, S; Be'eri-Shlevin, Y; Chiang, YR; Feuchtmayr, H; Gal, G; Ichise, S; Kagami, M; Kumagai, M; Liu, X; Matsuzaki, SIS; Manca, MM; Noges, P; Piscia, R; Rogora, M; Shiah, FK; Thackeray, SJ; Widdicombe, CE; Wu, JZ; Zohary, T; Hsieh, CH Causal networks of phytoplankton diversity and biomass are modulated by environmental context NATURE COMMUNICATIONS MAR 3 2022 13 1 1140 10.1038/s41467-022-28761-3 http://dx.doi.org/10.1038/s41467-022-28761-3
Golub, M; Thiery, W; Marce, R; Pierson, D; Vanderkelen, I; Mercado-Bettin, D; Woolway, RI; Grant, L; Jennings, E; Kraemer, BM; Schewe, J; Zhao, F; Frieler, K; Mengel, M; Bogomolov, VY; Bouffard, D; Cote, M; Couture, RM; Debolskiy, AV; Droppers, B; Gal, G; Guo, MY; Janssen, ABG; Kirillin, G; Ladwig, R; Magee, M; Moore, T; Perroud, M; Piccolroaz, S; Vinnaa, LR; Schmid, M; Shatwell, T; Stepanenko, VM; Tan, ZL; Woodward, B; Yao, HX; Adrian, R; Allan, M; Anneville, O; Arvola, L; Atkins, K; Boegman, L; Carey, C; Christianson, K; de Eyto, E; DeGasperi, C; Grechushnikova, M; Hejzlar, J; Joehnk, K; Jones, ID; Laas, A; Mackay, EB; Mammarella, I; Markensten, H; McBride, C; Ozkundakci, D; Potes, M; Rinke, K; Robertson, D; Rusak, JA; Salgado, R; van der Linden, L; Verburg, P; Wain, D; Ward, NK; Wollrab, S; Zdorovennova, G A framework for ensemble modelling of climate change impacts on lakes worldwide: the ISIMIP Lake Sector GEOSCIENTIFIC MODEL DEVELOPMENT 2022 15 11 4597 4623 10.5194/gmd-15-4597-2022 http://dx.doi.org/10.5194/gmd-15-4597-2022
Réalis-Doyelle, E., Cottin, N., Daufresne, M., Naffrechoux, E., Reynaud, S., Guillard, J. "Evolution of pace-of-life syndrome under conditions of maternal PCB contamination and global warming in early life stages of cold stenothermic fish (Arctic char)" AQUATIC TOXICOLOGY JAN 2023 255 106396 10.1016/j.aquatox.2023.106396 http://dx.doi,org/10.1016/j.aquatox.2023.106396
Desgué-Itier, O., Melo Vieira Soares, L., Anneville, O., Bouffard, D., Chanudet, V., Danis, P.-A., Domaizon, I., Guillard, J., Mazure, T., Sharaf, N., Soulignac, F., Tran-Khac, V., Vinçon-Leite, B., and Jenny, J.-P.: Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2022-260, 2022.
Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes Hydrology and Earth System Sciences 2023 27 3 https://doi.org/10.5194/hess-27-837-2023
ARTICLES 2021
Bieito Fernández Castro, Hannah Elisa Chmiel, Camille Minaudo, Shubham Krishna, Pascal Perolo, Serena Rasconi, and Alfred Wüest. Primary and Net Ecosystem Production in a Large Lake Diagnosed From High-Resolution Oxygen Measurements. Water Resources Research, 57(5), May 2021. doi: 10.1029/2020WR029283
Nathalie Lécrivain, Victor Frossard, Emmanuel Naffrechoux, and Bernard Clément. Looking at Organic Pollutants (OPs) Signatures in Littoral Sediments to Assess the Influence of a Local Urban Source at the Whole Lake Scale. Polycyclic Aromatic Compounds, 41(5):950–962, 2021b. doi:10.1080/10406638.2019.1631195
Nathalie Lécrivain, Bernard Clément, Aymeric Dabrin, Juliette Seigle-Ferrand, Damien Bouffard, Emmanuel NAFFRECHOUX, and Victor Frossard. Water-level fluctuation enhances sediment and trace metal mobility in lake littoral. Chemosphere, 264(2):128451, February 2021a. doi:10.1016/j.chemosphere.2020.128451
Sinziana Rivera, Frédéric Rimet, Valentin Vasselon, Marine Vautier, Isabelle Domaizon, and Agnes Bouchez. Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects. Molecular Ecology Resources, 2021b. doi:10.1111/1755-0998.13568
Emilie Lyautey, Elodie Billard, Nathalie Tissot, Stéphan Jacquet, and Isabelle Domaizon. Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments. Microbial ecology, 2021. doi: 10.1007/s00248-021-01689-9
Karan Kakouei, Benjamin Kraemer, Orlane Anneville, Laurence Carvalho, Heidrun Feuchtmayr, Jennifer Graham, Scott Higgins, Francesco Pomati, Lars Rudstam, Jason Stockwell, Stephen Thackeray, Michael Vanni, and Rita Adrian. Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections. Global Change Biology, 27(24): 6409–6422, December 2021. doi: 10.1111/gcb.15866
Jade Ezzedine, A. Janicot, Serena Rasconi, Isabelle Domaizon, and Stéphan Jacquet. Short-term dynamics of Bdellovibrio and like organisms in Lake Geneva in response to a simulated climatic extreme event. Microbial ecology, October 2021a. doi: 10.1007/s00248-021-01875-9
Benjamin Kraemer, Rachel Pilla, R. Iestyn Woolway, Orlane Anneville, Syuhei Ban, William Colom-Montero, Shawn Devlin, Martin Dokulil, Evelyn Gaiser, K. David Hambright, Dag Hessen, Scott Higgins, Klaus Jöhnk, Wendel Keller, Lesley Knoll, Peter Leavitt, Fabio Lepori, Martin Luger,Stephen Maberly, Dörthe Müller-Navarra, Andrew Paterson, Donald Pierson, David Richardson, Michela Rogora, James Rusak, Steven Sadro, Nico Salmaso, Martin Schmid, Eugene Silow, Ruben Sommaruga, Julio Stelzer, Dietmar Straile, Wim Thiery, Maxim Timofeyev, Piet Verburg, Gesa
Weyhenmeyer, and Rita Adrian. Climate change drives widespread shifts in lake thermal habitat. Nature Climate Change, 11(6):521–529, June 2021. doi: 10.1038/s41558-021-01060-3
Chloé Vagnon, Franck Cattanéo, Chloé Goulon, David Grimardias, Jean Guillard, and Victor Frossard. An allometric niche model for species interactions in temperate freshwater ecosystems. Ecosphere, 12(3), March 2021. doi: 10.1002/ecs2.3420
Rosalie Bruel, Stéphanie Girardclos, Aldo Marchetto, Katrina Kremer, Christian Crouzet, Jean-Louis Reyss, Pierre Sabatier, and Marie-Elodie Perga. Reframing Lake Geneva ecological trajectory in a context of multiple but asynchronous pressures. Journal of Paleolimnology, 65(3):353–368, March 2021. doi: 10.1007/s10933-021-00176-y
Lisandrina Mari, Martin Daufresne, Jean Guillard, Guillaume Evanno, and Emilien Lasne. Elevated temperature and deposited sediment jointly affect early life history traits in southernmost Arctic char populations. Canadian Journal of Fisheries and Aquatic Sciences, 78(6):744–751, January 2021. doi:10.1139/cjfas-2020-0256
Shubham Krishna, Hugo N Ulloa, Onur Kerimoglu, Camille Minaudo, Orlane Anneville, and Alfred Wüest. Model-based data analysis of the effect of winter mixing on primary production in a lake under reoligotrophication. Ecological Modelling, 440:109401, January 2021. doi:10.1016/j.ecolmodel.2020.109401.
Marthe Moiron, Frédéric Rimet, Cyrille Girel, and Stéphan Jacquet. Die hard in Lake Bourget! The case of Planktothrix rubescens reborn. Annales de Limnologie - International Journal of Limnology, 57:19, 2021. doi: 10.1051/limn/2021014
Jonathan P Doubek, Orlane Anneville, Gaël Dur, Aleksandra M Lewandowska, Vijay P Patil, James A Rusak, Nico Salmaso, Christian Torsten Seltmann, Dietmar Straile, Pablo Urrutia-Cordero, Patrick Venail, Rita Adrian, Mar´ıa B Alfonso, Curtis L DeGasperi, Elvira Eyto, Heidrun Feuchtmayr, Evelyn E Gaiser, Scott F Girdner, Jennifer L Graham, Hans-Peter Grossart, Josef Hejzlar, Stéphan Jacquet, Georgiy Kirillin, Mar´ıa E Llames, Shin-ichiro S Matsuzaki, Emily R Nodine, Maria Cintia Piccolo, Don C Pierson, Alon Rimmer, Lars G Rudstam, Steven Sadro, Hilary M Swain,Stephen J Thackeray, Wim Thiery, Piet Verburg, Tamar Zohary, and Jason D Stockwell. The extent and variability of storm-induced temperature changes in lakes measured with long-term and high-frequency data. Limnology and Oceanography, 66(5):1979–1992, 2021. doi: 10.1002/lno.11739
ARTICLES 2020
Frédéric Rimet, Orlane Anneville, Denis Barbet, Cécile Chardon, Laura Crepin, et al.. The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public. Journal of Limnology, 2020, 79 (2), pp.164-178. ff10.4081/jlimnol.2020.1944ff. ffhal-02916312
Blanluet, A., Goulon, C., Lebourges-Dhaussy, A. et al. Effect of a Transducer Horizontality Default on Lake Fish Stock Assessment. Acoust Aust (2020). https://doi.org/10.1007/s40857-020-00206-1
Michaël Girard, Chloé Goulon, Anne Tessier, Pascal Vonlanthen, Jean Guillard ; Comparisons of day-time and night-time hydroacoustic surveys in temperate lakes Aquat. Living Resour. 33 9 (2020) DOI: 10.1051/alr/2020011
Jonathan Derot, Hiroshi Yajima, Stéphan Jacquet, Advances in forecasting harmful algal blooms using machine learning models: A case study with Planktothrix rubescens in Lake Geneva, Harmful Algae, Volume 99, 2020, 101906, ISSN 1568-9883, https://doi.org/10.1016/j.hal.2020.101906.
Marine Lemaire, Jean Guillard, Orlane Anneville, Jérémy Lobry, Major biomass fluctuations in lake food webs – An example in the peri-alpine Lake Annecy, Journal of Great Lakes Research, Volume 46, Issue 4, 2020, Pages 798-812,ISSN 0380-1330, https://doi.org/10.1016/j.jglr.2020.04.007.
Nathalie Lécrivain, Bernard Clément, Aymeric Dabrin, Juliette Seigle-Ferrand, Damien Bouffard, Emmanuel Naffrechoux, Victor Frossard, Water-level fluctuation enhances sediment and trace metal mobility in lake littoral, Chemosphere, Volume 264, Part 2, 2021, 128451, ISSN 0045-6535, https://doi.org/10.1016/j.chemosphere.2020.128451.
Theo Baracchini, Stef Hummel, Martin Verlaan, Andrea Cimatoribus, Alfred Wüest, Damien Bouffard,An automated calibration framework and open source tools for 3D lake hydrodynamic models, Environmental Modelling & Software, Volume 134, 2020, 104787, ISSN 1364-8152, https://doi.org/10.1016/j.envsoft.2020.104787.
Baracchini, T., Chu, P. Y., Šukys, J., Lieberherr, G., Wunderle, S., Wüest, A., and Bouffard, D.: Data assimilation of in situ and satellite remote sensing data to 3D hydrodynamic lake models: a case study using Delft3D-FLOW v4.03 and OpenDA v2.4, Geosci. Model Dev., 13, 1267–1284, https://doi.org/10.5194/gmd-13-1267-2020, 2020.
ARTICLES 2019
Articles dans des revues à comité de lecture répertoriées dans la base ISI Web of Knowledge : (ACL)
Anneville O., Chang C.W., Dur G., Souissi S., Rimet F., Hsieh C.H., 2019. The paradox of re-oligotrophication: the role of bottom-up versus top-down controls on the phytoplankton community. Oikos. 128 : 1666-1677. https://doi.org/10.1111/oik.06399
Bruel R., Girardclos S., Marchetto A., Kremer K., Crouzet C., Reyss J.-L., et al. (2019). Reframing Lake Geneva ecological trajectory in a context of multiple but asynchronous drivers. EarthArXiv. https://doi.org/10.31223/osf.io/j8up3
Lécrivain N., Frossard V., Clément B., 2019. Changes in mobility of trace metals at the sediment-water-biota interfaces following laboratory drying and re-immersion of a lacustrine sediment. Environmental Science and Pollution Research, 26: 14050-14058
Lécrivain N., Frossard V., Clément B., 2019. Contribution of trace metallic elements to weakly contaminated lacustrine sediments: effects on benthic and pelagic organisms through multi-species laboratory bioassays. Ecotoxicology, 28 : 154–166
Lécrivain N., Frossard V., Naffrechoux E., Clément B., 2019. Looking at Organic Pollutants (OPs) signatures in Littoral sediments to assess the influence of a local urban source at the whole lake scale. Polycyclic Aromatic Compounds, https://doi.org/10.1080/10406638.2019.1631195
Lepère C., Domaizon I., Humbert J-F., Jardillier L., Hugoni M., Debroas D., 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7:e6247 https://doi.org/10.7717/peerj.6247
Masset T., Frossard V., Perga M.E., Cottin N., Piot C., Cachera S., Naffrechoux E., 2019. Trophic position and individual feeding habits as drivers of differential PCB bioaccumulation in fish populations. Science of the Total Environment, 674: 472-481.
Metz S., Singer D., Domaizon I., Unrein F., Lara E., 2019. Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches. Environmental Microbiology, 21(10): 3885-3895. https://doi.org/10.1111/1462-2920.14738
Mouget, A., Goulon, C., Axenrot, T., Balk, H., Lebourges-Dhaussy, A., Godlewska, M., Guillard, J., 2019. Including 38 kHz in the standardization protocol for hydroacoustic fish surveys in temperate lakes. Remote sensing in Ecology and Conservation, 5(4): 332–345 doi: 10.1002/rse2.112
Nouchi, V., Kutser, T., Wüest, A. et al. Resolving biogeochemical processes in lakes using remote sensing. Aquat Sci 81, 27 (2019). https://doi.org/10.1007/s00027-019-0626-3
Paix B., Ezzedine J.A., Jacquet S., 2019. Diversity, dynamics, and distribution of Bdellovibrio and like organisms in Perialpine Lakes. Applied and Environmental Microbiology 85 (6) e02494-18; DOI: 10.1128/AEM.02494-18
Rimet F., Feret L., Bouchez A., Dorioz J.M., Dambrine E. (2019) Factors influencing the heterogeneity of benthic diatom communities within alpine lakes. Hydrobiologia, 839: 103-118. https://doi.org/10.1007/s10750-019-03999-z
oulignac F., Anneville O., Bouffard D., Chanudet V., Dambrine E., Guénand Y., Harmel T., Ibelings B., Trevisan D., Uittenbogaard R., Danis P.-A., 2019. Contribution of 3D coupled hydrodynamic-ecological modeling to assess the representativeness of a sampling protocol for lake water quality assessment. Knowledge & Management of Aquatic Ecosystems. 420, 42. https://doi.org/10.1051/kmae/2019034
Weyhenmeyer G. et al., 2019. Widespread diminishing anthropogenic effects on calcium in freshwaters. Scientific Report 9, 10450 doi:10.1038/s41598-019-46838-w
Articles dans des revues non répertoriées dans la base ISI Web of Knowledge
Baulaz Y., 2019, Chroniques de la pêche au Léman, Les voix du Léman, 3 p.
Ezzedine J.A., Jacquet S., 2019. Diversité et rôles des bactéries prédatrices de bactéries: Zoom sur les Bdellovibrio et organismes apparentés (BALOs). Notes Académiques de l'Académie d'Agriculture de France 2 : 1-25
Frossard V., Cattanéo F., Domaizon I., Goulon C., Grimardias D., Guillard J., Lucas S., Ropars C. et Vagnon C., 2019. Le silure (Silurus glanis) dans les grands lacs alpins : un modèle d’étude émergent. Les voix du Léman / APALLF 42
Jacquet, S., Domaizon, I., Napoleoni R., Bosson J.B., 2019. Des lacs sous surveillance. Nature & Patrimoine des Pays de Savoie, pp 8-12.
Lohéac, B., Caudron, A., Guillard, J., 2019. Communautés piscicoles introduites des lacs d’altitude : approches scientifiques et influences idéologiques. Revue des sciences de l'eau, 32, (1), 39–50. https://doi.org/10.7202/1059879ar
ARTICLES 2018
Anneville, O., Dur, G., Rimet, F., Souissi, S., 2018. Plasticity in phytoplankton annual periodicity: an adaptation to long-term environmental changes. Hydrobiologia 824, 121–141. https://doi.org/10.1007/s10750-017-3412-z
Bouffard, D., Kiefer, I., Wüest, A., Wunderle, S., Odermatt, D., 2018. Are surface temperature and chlorophyll in a large deep lake related? An analysis based on satellite observations in synergy with hydrodynamic modelling and in-situ data. Remote Sensing of Environment 209, 510–523. https://doi.org/10.1016/j.rse.2018.02.056
Bruce, L.C., Frassl, M.A., Arhonditsis, G.B., Gal, G., Hamilton, D.P., Hanson, P.C., Hetherington, A.L., Melack, J.M., Read, J.S., Rinke, K., Rigosi, A., Trolle, D., Winslow, L., Adrian, R., Ayala, A.I., Bocaniov, S.A., Boehrer, B., Boon, C., Brookes, J.D., Bueche, T., Busch, B.D., Copetti, D., Cortés, A., de Eyto, E., Elliott, J.A., Gallina, N., Gilboa, Y., Guyennon, N., Huang, L., Kerimoglu, O., Lenters, J.D., MacIntyre, S., Makler-Pick, V., McBride, C.G., Moreira, S., Özkundakci, D., Pilotti, M., Rueda, F.J., Rusak, J.A., Samal, N.R., Schmid, M., Shatwell, T., Snorthheim, C., Soulignac, F., Valerio, G., van der Linden, L., Vetter, M., Vinçon-Leite, B., Wang, J., Weber, M., Wickramaratne, C., Woolway, R.I., Yao, H., Hipsey, M.R., 2018. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental Modelling & Software 102, 274–291. https://doi.org/10.1016/j.envsoft.2017.11.016
Cimatoribus, A. A., Lemmin, U., Bouffard, D., & Barry, D. A. (2018). Nonlinear dynamics of the nearshore boundary layer of a large lake (Lake Geneva). Journal of Geophysical Research: Oceans, 123, 1016– 1031. https://doi.org/10.1002/2017JC013531
Frantz, A., Perga, M.-E., Guillard, J., 2018. Parasitic versus nutritional regulation of natural fish populations. Ecology and Evolution 8, 8713–8725. https://doi.org/10.1002/ece3.4391
Frossard, V., Fontvieille, D., 2018. What is the invasiveness of Hemimysis anomala (Crustacea, Mysidae) in the large deep Lake Bourget, France? Hydrobiologia 814, 219–232. https://doi.org/10.1007/s10750-018-3538-7
Frossard, V., Marchand, P., 2018. Littoral chironomids of a large Alpine lake: spatial variation and variables supporting diversity. Knowledge & Management of Aquatic Ecosystems 45. https://doi.org/10.1051/kmae/2018034
Frossard, V., Rimet, F., Perga, M.-E., 2018. Causal networks reveal the dominance of bottom-up interactions in large, deep lakes. Ecological Modelling 368, 136–146. https://doi.org/10.1016/j.ecolmodel.2017.11.021
Leach, T.H., Beisner, B.E., Carey, C.C., Pernica, P., Rose, K.C., Huot, Y., Brentrup, J.A., Domaizon, I., Grossart, H.-P., Ibelings, B.W., Jacquet, S., Kelly, P.T., Rusak, J.A., Stockwell, J.D., Straile, D., Verburg, P., 2018. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification: Patterns and drivers of DCM structure across lakes. Limnology and Oceanography 63, 628–646. https://doi.org/10.1002/lno.10656
Lécrivain, N., Aurenche, V., Cottin, N., Frossard, V., Clément, B., 2018. Multi-contamination (heavy metals, polychlorinated biphenyls and polycyclic aromatic hydrocarbons) of littoral sediments and the associated ecological risk assessment in a large lake in France (Lake Bourget). Science of The Total Environment 619–620, 854–865. https://doi.org/10.1016/j.scitotenv.2017.11.151
Monchamp, M.-E., Spaak, P., Domaizon, I., Dubois, N., Bouffard, D., Pomati, F., 2018. Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution 2, 317–324. https://doi.org/10.1038/s41559-017-0407-0
Vincent Nouchi, Daniel Odermatt, Alfred Wüest & Damien Bouffard (2018) Effects of non-uniform vertical constituent profiles on remote sensing reflectance of oligo- to mesotrophic lakes, European Journal of Remote Sensing, 51:1, 808-821, DOI: 10.1080/22797254.2018.1493360
Parikka, K.J., Jacquet, S., Colombet, J., Guillaume, D., Le Romancer, M., 2018. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology 41, 1335–1352. https://doi.org/10.1007/s00300-018-2288-3
Pollet, T., Berdjeb, L., Chardon, C., Jacquet, S., 2018. Contrasting temporal patterns in ammonia-oxidizing archaeal community dynamics in two peri-alpine lakes with different trophic status. Aquatic Microbial Ecology 81, 95–108. https://doi.org/10.3354/ame01861
Rahaghi, A.I., Lemmin, U., Cimatoribus, A., Bouffard, D., Riffler, M., Wunderle, S., Barry, D.A., 2018. Improving surface heat flux estimation for a large lake through model optimization and two-point calibration: The case of Lake Geneva: Surface heat flux calibration. Limnology and Oceanography: Methods 16, 576–593. https://doi.org/10.1002/lom3.10267
Rimet, F., Druart, J.-C., 2018. A trait database for Phytoplankton of temperate lakes. Annales de Limnologie - International Journal of Limnology 54, 18. https://doi.org/10.1051/limn/2018009
Rivera, S.F., Vasselon, V., Jacquet, S., Bouchez, A., Ariztegui, D., Rimet, F., 2018. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 807, 37–51. https://doi.org/10.1007/s10750-017-3381-2
Schwefel, R., Steinsberger, T., Bouffard, D., Bryant, L.D., Müller, B., Wüest, A., 2018. Using small-scale measurements to estimate hypolimnetic oxygen depletion in a deep lake: Oxygen depletion in a deep lake. Limnology and Oceanography 63, S54–S67. https://doi.org/10.1002/lno.10723
Soulignac, F., Danis, P.-A., Bouffard, D., Chanudet, V., Dambrine, E., Guénand, Y., Harmel, T., Ibelings, B.W., Trevisan, D., Uittenbogaard, R., Anneville, O., 2018. Using 3D modeling and remote sensing capabilities for a better understanding of spatio-temporal heterogeneities of phytoplankton abundance in large lakes. Journal of Great Lakes Research 44, 756–764. https://doi.org/10.1016/j.jglr.2018.05.008
Vasselon, V., Bouchez, A., Rimet, F., Jacquet, S., Trobajo, R., Corniquel, M., Tapolczai, K., Domaizon, I., 2018. Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology and Evolution 9, 1060–1069. https://doi.org/10.1111/2041-210X.12960
ARTICLES 2017
Capo, E., Debroas, D., Arnaud, F., Perga, M.-E., Chardon, C., Domaizon, I., 2017. Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming: Long-term dynamics of microbial eukaryotes. Environmental Microbiology 19, 2873–2892. https://doi.org/10.1111/1462-2920.13815
David, P., Thébault, E., Anneville, O., Duyck, P.-F., Chapuis, E., Loeuille, N., 2017. Impacts of Invasive Species on Food Webs, in: Advances in Ecological Research. Elsevier, pp. 1–60. https://doi.org/10.1016/bs.aecr.2016.10.001
Debroas, D., Domaizon, I., Humbert, J.-F., Jardillier, L., Lepère, C., Oudart, A., Taïb, N., 2017. Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data. FEMS Microbiology Ecology 93. https://doi.org/10.1093/femsec/fix023
Domaizon, I., Winegardner, A., Capo, E., Gauthier, J., Gregory-Eaves, I., 2017. DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity. Journal of Paleolimnology 58, 1–21. https://doi.org/10.1007/s10933-017-9958-y
Dugan, H.A., Summers, J.C., Skaff, N.K., Krivak-Tetley, F.E., Doubek, J.P., Burke, S.M., Bartlett, S.L., Arvola, L., Jarjanazi, H., Korponai, J., Kleeberg, A., Monet, G., Monteith, D., Moore, K., Rogora, M., Hanson, P.C., Weathers, K.C., 2017. Long-term chloride concentrations in North American and European freshwater lakes. Scientific Data 4, 170101. https://doi.org/10.1038/sdata.2017.101
Feret, L., Bouchez, A., Rimet, F., 2017. Benthic diatom communities in high altitude lakes: a large scale study in the French Alps. Annales de Limnologie - International Journal of Limnology 53, 411–423. https://doi.org/10.1051/limn/2017025
Fouinat, L., Sabatier, P., Poulenard, J., Etienne, D., Crouzet, C., Develle, A.-L., Doyen, E., Malet, E., Reyss, J.-L., Sagot, C., Bonet, R., Arnaud, F., 2017. One thousand seven hundred years of interaction between glacial activity and flood frequency in proglacial Lake Muzelle (western French Alps). Quaternary Research 87, 407–422.
Frossard, V., Verneaux, V., Giraudoux, P., 2017. Quantitative assessment of the reliability of chironomid remains in paleoecology: effects of count density and sample size. Journal of Paleolimnology 57, 205–212. https://doi.org/10.1007/s10933-016-9927-x
Gallina, N., Beniston, M., Jacquet, S., 2017. Estimating future cyanobacterial occurrence and importance in lakes: a case study with Planktothrix rubescens in Lake Geneva. Aquatic Sciences 79, 249–263. https://doi.org/10.1007/s00027-016-0494-z
Grimardias, D., Guillard, J., Cattanéo, F., 2017. Drawdown flushing of a hydroelectric reservoir on the Rhône River: Impacts on the fish community and implications for the sediment management. Journal of Environmental Management 197, 239–249. https://doi.org/10.1016/j.jenvman.2017.03.096
Kamenova, S., Bartley, T.J., Bohan, D.A., Boutain, J.R., Colautti, R.I., Domaizon, I., Fontaine, C., Lemainque, A., Le Viol, I., Mollot, G., Perga, M.-E., Ravigné, V., Massol, F., 2017. Invasions Toolkit, in: Advances in Ecological Research. Elsevier, pp. 85–182. https://doi.org/10.1016/bs.aecr.2016.10.009
Kerimoglu, O., Jacquet, S., Vinçon-Leite, B., Lemaire, B.J., Rimet, F., Soulignac, F., Trévisan, D., Anneville, O., 2017. Modelling the plankton groups of the deep, peri-alpine Lake Bourget. Ecological Modelling 359, 415–433. https://doi.org/10.1016/j.ecolmodel.2017.06.005
Kraemer, B.M., Chandra, S., Dell, A.I., Dix, M., Kuusisto, E., Livingstone, D.M., Schladow, S.G., Silow, E., Sitoki, L.M., Tamatamah, R., McIntyre, P.B., 2017. Global patterns in lake ecosystem responses to warming based on the temperature dependence of metabolism. Global Change Biology 23, 1881–1890. https://doi.org/10.1111/gcb.13459
Nõges, T., Anneville, O., Guillard, J., Haberman, J., Järvalt, A., Manca, M., Morabito, G., Rogora, M., Thackeray, S.J., Volta, P., Winfield, I.J., Nõges, P., 2017. Fisheries impacts on lake ecosystem structure in the context of a changing climate and trophic state. Journal of Limnology. https://doi.org/10.4081/jlimnol.2017.1640
Perga, M.-E., Nellier, Y.-M., Cottin, N., Fanget, P., Naffrechoux, E., 2017. Bioconcentration may be favoured over biomagnification for fish PCB contamination in high altitude lakes. Inland Waters 7, 14–26. https://doi.org/10.1080/20442041.2017.1294320
Pistocchi, C., Tamburini, F., Gruau, G., Ferhi, A., Trevisan, D., Dorioz, J.-M., 2017. Tracing the sources and cycling of phosphorus in river sediments using oxygen isotopes: Methodological adaptations and first results from a case study in France. Water Research 111, 346–356. https://doi.org/10.1016/j.watres.2016.12.038
Savary, R., Dufresnes, C., Champigneulle, A., Caudron, A., Dubey, S., Perrin, N., Fumagalli, L., 2017. Stocking activities for the Arctic charr in Lake Geneva: Genetic effects in space and time. Ecology and Evolution 7, 5201–5211. https://doi.org/10.1002/ece3.3073
Steinsberger, T., Schmid, M., Wüest, A., Schwefel, R., Wehrli, B., Müller, B., 2017. Organic carbon mass accumulation rate regulates the flux of reduced substances from the sediments of deep lakes. Biogeosciences 14, 3275–3285. https://doi.org/10.5194/bg-14-3275-2017
Vasselon, V., Domaizon, I., Rimet, F., Kahlert, M., Bouchez, A., 2017. Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter? Freshwater Science 36, 162–177. https://doi.org/10.1086/690649
