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Dernière mise à jour : Mai 2018

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Publications of the CIRM

2019

Garnier L, Leyva Salas M, Pinon N, Wiernasz N, Pawtowski A, Coton E, Mounier J, Valence F (2019) Technical note: High-throughput method for antifungal activity screening in a cheese-mimicking model. J Dairy Sci. (accepted for publication)

2018

Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpöel-Gimbert I, Ruiz-Duenas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso M-N (2018) Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass. Biotechnol Biofuels. 11:201.

 

Lesage-Meessen L, Bou M, Ginies C, Chevret D, Navarro D, Drula E, Bonnin E, del Rio JC, Odinot E, Bisotto A, Berrin J-G, Sigoillot J-C, Faulds CB, Lomascolo A (2018) Lavender and lavandin distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes. Biotechnol Biofuels. 11:217.

 

Ponsart C, Garin-Bastuji B, Riou M, Locatelli Y, Fadeau A, Jaÿ M, Jacques I, Simon R, Perrot L, Breton S, Chaumeil T, Blanc B, Ortiz K, Rioult D, Quéméré E, Sarradin P, Chollet J-Y, Rossi S (2018). Vaccination anti-brucellique du bouquetin des Alpes (Capra ibex), une option pour l'assainissement du massif du Bargy ? Résultats d'une première expérimentation visant à comparer le niveau d'innocuité du vaccin REV.1 conjonctival chez le bouquetin des Alpes et la chèvre domestique (C. hircus). Epidémiologie et Santé Animale, 74, 25-42.

 

Vergnaud, G., Hauck, Y., Christiany, D., Daoud, B., Pourcel, C., Jacques, I., Cloeckaert, A. (Auteur de correspondance), Zygmunt, M. S. (2018). Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006. Frontiers in Microbiology, 9, 1-11.
 

2017

Quintilla R, Kolecka A, Casaregola S, Daniel HM, Houbraken J, Kostrzewa M, Boekhout T, Groenewald M (2017) MALDI-TOF MS as a tool to identify foodborne yeasts and yeast-like fungi. Int J Food Microbiol. 266:109-118.
Smith D, Stackebranft E, Casaregola S, Romano P, Glöckner FO (2017) MIRRI recommendations for exploiting the full potential of micro-organism data. Ann Biom Biostat. 4:1027.

 

Sarilar V, Sterck L, Matsumoto S, Jacques N, Neuvéglise C, Tinsley CR, Sicard D, Casaregola S (2017). Genome sequence of the type strain CLIB 1764(T) (= CBS 14374(T)) of the yeast species Kazachstania saulgeensis isolated from French organic sourdough. Genom Data. 13:41-43.

 

Ribeiro LR, Santos ARO, Groenewald M, Smith MTH, Lara CA, Góes-Neto A, Jacques N, Grondin C, Casaregola S, Lachance MA, Rosa CA (2017) Description of Hyphopichia buzzinii f.a., sp. nov. and Hyphopichia homilentoma comb. nov., the teleomorph of Candida homilentoma. Antonie Van Leeuwenhoek. 110:985-994.

 

Jacques N, Mallet S, Laaghouiti F, Tinsley CR, Casaregola S (2017) Specific populations of the yeast Geotrichum candidum revealed by molecular typing. Yeast. 34:165-178.

 

Miyauchi S, Navarro D, Grisel S, Chevret D, Berrin JG, Rosso MN (2017) The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown. PLoS One. 12:e0175528.

 

Gauthier A, Jaubert J, Traversier N, Lemant J, Balu L, Garcia-Hermoso D, Welti S, Favel A, Picot S, Hoarau G (2017) Trametes polyzona, an emerging filamentous basidiomycete in Réunion Island. Mycoses. 60:412-415.

 

Odinot, E., Fine, F., Sigoillot, J.-C., Navarro, D., Laguna, O., Bisotto, A., Peyronnet, C., Ginies, C., Lecomte, J., Faulds, C., Lomascolo, A. (2017). A two-step bioconversion process for canolol production from rapeseed meal combining an Aspergillus niger feruloyl esterase and the fungus Neolentinus lepideus. Microorganisms. 5:E67.

 

Mieszkin S, Hymery N, Debaets S, Coton E, Le Blay G, Valence F, Mounier J. (2017). Action mechanisms involved in the bioprotective effect of Lactobacillus harbinensis K.V9.3.1.Np against Yarrowia lipolytica in yogurt. Int J Food Microbiol. 248:47-55.

 

Garnier L, Valence F, Pawtowski A, Auhustsinava-Galerne L, Frotté N, Deniel F, Coton E, Mounier J. (2017). Diversity of spoilage fungi associated with various French dairy products. Int J Food Microbiol. 241:191-197.
M. Leyva Salas, J.  Mounier, F. Valence, M. Coton, A. Thierry and E. Coton (2017).  Antifungal Microbial agents for food bio-preservation-A review. Microorganisms. 5:E37.

 

Deutsch SM, Mariadassou M, Nicolas P, Parayre S, Le Guellec R, Chuat V, Peton V, Le Maréchal C, Burati J, Loux V, Briard-Bion V, Jardin J, Plé C, Foligné B, Jan G, Falentin H. (2017). Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study. Sci Rep. 7:46409.

 

Cousin FJ, Lynch DB, Chuat V, Bourin MJB, Casey PG, Dalmasso M, Harris HMB, McCann A, O’Toole PW (2017) A long and abundant non-coding RNA in Lactobacillus salivarius. Microbial Genomics. 3:e000126.

 

Richard D, Boyer C, Lefeuvre P, Canteros BI, Beni-Madhu S, Portier P, Pruvost O (2017). Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, belonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology (2017) Genome Announc. 23:e01693-16.

 

Merda D, Briand M, Bosis E, Rousseau C, Portier P, Barret M, Jacques M-A, Fischer-Le Saux M (2017) Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens (2017) Mol Ecol.26:5939-5952.

 

Osdaghi E, Forero-Serna N, Bolot S, Fischer-Le Saux M, Jacques M-A, Portier P, Carrère S, Koebnik R (2017) High-quality draft genome sequence of Curtobacterium sp. strain Ferrero. Genome Announc. 5:e01378-17.

2016

Aburjaile FF, Madec MN, Parayre S, Miyoshi A, Azevedo V, Le Loir Y, Falentin H (2016) The long-term survival of Propionibacterium freudenreichii in a context of nutrient shortage. J Appl Microbiol  120:432-440

 

Aburjaile FF, Rohmer M, Parrinello H, Maillard MB, Beaucher E, Henry G, Nicolas A, Madec MN, Thierry A, Parayre S, Deutsch SM, Cocaign-Bousquet M, Miyoshi A, Azevedo V, Le Loir Y, Falentin H (2016) Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage. BMC Genomics   17:1007

 

Berri M, Slugocki C, Olivier M, Helloin E, Jacques I, Salmon H, Demais H, Le Goff M, Collen PN (2016) Marine-sulfated polysaccharides extract of Ulva armoricana green algae exhibits an antimicrobial activity and stimulates cytokine expression by intestinal epithelial cells. J Appl Phycol  28:2999-3008

 

Boundy-Mills KL, Glantschnig E, Roberts IN, Yurkov A, Casaregola S, Daniel HM, Groenewald M, Turchetti B (2016) Yeast culture collections in the twenty-first century: new opportunities and challenges. Yeast  33:243-260

 

Burgaud G, Coton M, Jacques N, Debaets S, Maciel NO, Rosa CA, Gadanho M, Sampaio JP, Casaregola S (2016) Yamadazyma barbieri f.a. sp. nov., an ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (-2300 m) and marine coastal waters. Int J Syst Evol Microbiol  66:3600-3606

 

Casaregola S, Vasilenko A, Romano P, Robert V, Ozerskaya S, Kopf A, Glockner FO, Smith D (2016) An Information System for European culture collections: the way forward. Springerplus  5:772

 

Falentin H, Deutsch SM, Loux V, Hammani A, Buratti J, Parayre S, Chuat V, Barbe V, Aury JM, Jan G, Le Loir Y (2016) Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20). Stand Genomic Sci  11:6

 

Foligné B, Parayre S, Cheddani R, Famelart MH, Madec MN, Plé C, Breton J, Dewulf J, Jan G, Deutsch SM (2016) Immunomodulation properties of multi-species fermented milks. Food Microbiol  53:60-69

 

Giovanardi D, Bonneau S, Gironde S, Fischer-Le Saux M, Manceau C, Stefani E (2016) Morphological and genotypic features of Xanthomonas arboricola pv. juglandis populations from walnut groves in Romagna region, Italy. European J Plant Pathol  145:1-16

 

Guyot N, Réhault-Godbert S, Slugocki C, Harichaux G, Labas V, Helloin E, Nys Y (2016) Characterization of egg white antibacterial properties during the first half of incubation: A comparative study between embryonated and unfertilized eggs. Poult Sci  95:2956-2970

 

Jacques MA, Arlat M, Boulanger A, Boureau T, Carrère S, Cesbron S, Chen NWG, Cociancich S, Darrasse A, Denancé N, Fischer-Le Saux M, Gagnevin L, Koebnik R, Lauber E, Noël LD, Pieretti I, Portier P, Pruvost O, Rieux A, Robène I, Royer M, Szurek B, Verdier V, Vernière C (2016) Using ecology, physiology, and genomics to understand host specificity in xanthomonas: french network on xanthomonads (FNX). Annu Rev Phytopathol  54:163-187

Jacques MA, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D (2016) New Variants of Coffee-infecting Xylella fastidiosa issued from homologous recombination. Appl Environ Microbiol  82:1556-1568.

 

Jacques N, Sarilar V, Urien C, Lopes MR, Morais CG, Uetanabaro AP, Tinsley CR, Rosa CA, Sicard D, Casaregola S (2016) Three novel ascomycetous yeast species of the Kazachstania clade, Kazachstania saulgeensis sp. nov., Kazachstania serrabonitensis sp. nov. and Kazachstania australis sp. nov. Reassignment of Candida humilis to Kazachstania humilis f.a. comb. nov. and Candida pseudohumilis to Kazachstania pseudohumilis f.a. comb. nov. Int J Syst Evol Microbiol  66:5192-5200

 

Kempf F, Slugocki C, Blum SE, Leitner G, Germon P (2016) Genomic comparative study of bovine mastitis Escherichia coliPloS One  11:e0147954

 

Lhomme E, Onno B, Chuat V, Durand K, Orain S, Valence F, Dousset X, Jacques MA (2016) Genotypic diversity of Lactobacillus sanfranciscensis strains isolated from French organic sourdoughs. Int J Food Microbiol  226:13-19

 

Luiz LM, Chuat V, Madec MN, Araújo EA, de Carvalho AF, Valence F (2016) Mesophilic lactic acid bacteria diversity encountered in Brazilian farms producing milk with particular interest in Lactococcus lactis strains. Curr Microbiol  73:503-511

 

Merda D, Bonneau S, Guimbaud J-F, Durand K, Brin C, Boureau T, Lemaire C, Jacques M-A, Fischer-Le Saux M (2016) Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems. Environ Microbiol Rep  8:572-581

 

Murase K, Martin P, Porcheron G, Houle S, Helloin E, Penary M, Nougayrede JP, Dozois CM, Hayashi T, Oswald E (2016) Hlyf produced by extraintestinal pathogenic Escherichia coli is a virulence factor that regulates outer membrane vesicle biogenesis. J Infect Dis  213:856-865

 

Pinheiro-Luiz L, Chuat V, Araújo E, de Carvalho A, Valence F (2016) Mesophilic lactic acid bacteria diversity encountered in Brazilian farms producing milk with particular interest in Lactococcus lactis strains. Current Microbiol  73:503-511

 

Pogacic T, Maillard MB, Leclerc A, Herve C, Chuat V, Valence F, Thierry A (2016) Lactobacillus and Leuconostoc volatilomes in cheese conditions. Appl Microbiol Biotechnol  100:2335-2346

 

Tra Bi CY, N'guessan FK, Kouakou CA, Jacques N, Casaregola S, Dje MK (2016) Identification of yeasts isolated from raffia wine (Raphia hookeri) produced in Cote d'Ivoire and genotyping of Saccharomyces cerevisiae strains by PCR inter-delta. World J Microbiol Biotechnol  32:125

2015

Bolot S, Cerutti A, Carrère S, Arlat M, Fischer-Le Saux M, Portier P, Poussier S, Jacques MA, Noël LD (2015) Genome sequences of the race 1 and race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817. Genome Announc  3:e01023-15. 

 

Bouchard D, Seridan B, Saraoui T, Rault L, Germon P, Gonzalez Moreno C, Nader-Macias F, François P, Chuat V, Chain F, Langella P, Nicoli J, Le Loir Y, and Even S (2015) Lactic acid bacteria isolated from bovine mammary microbiota: Potential allies against bovine mastitis. PLoS One  10:e0144831

 

Campillo T, Luna E, Portier P, Fischer-Le Saux M, Lapitan N, Tisserat NA, Leach JE (2015) Erwinia iniecta sp. nov., isolated from Russian wheat aphid (Diuraphis noxia). Int J Syst Evol Microbiol  65: 3625-3633

 

Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques M A (2015) Comparative genomics of pathogenic and nonpathogenic strains of Xanthomonas arboricola unveil molecular and evolutionary events linked to pathoadaptation. Front Plant Sci  6:1126

 

Chuat V, Dalmasso M (2015) Pulsed field gel electrophoresis for Leuconostoc mesenteroides and L. pseudomesenteroidesMethods Mol Biol  1301:241-251

 

Chuat V, de Freitas R, Dalmasso M (2015) Pulsed field gel electrophoresis for dairy PropionibacteriaMethods Mol Biol  1301:265-275

 

Cunty A, Poliakoff F, Rivoal C, Cesbron S, Fischer-Le Saux M, Lemaire C, Jacques MA, Manceau C, Vanneste JL (2015) Chacterization of Pseudomonas syringae pv. actinidiae (Psa) isolated from France and assignment of Psa biovar 4 to a de novo pathovar: Pseudomonas syringae pv. actinidifoliorum pv. nov. Plant Pathol  64:582–596

 

Couturier M, Navarro D, Chevret D, Henrissat B, Piumi F, Ruiz-Dueñas FJ, Martinez AT, Grigoriev IV, Riley R, Lipzen A, Berrin JG, Master ER, Rosso MN. (2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineusBiotechnol Biofuels  8:216

 

De Freitas R, Chuat V, Madec M-N, Mukdsi MC, Falentin H, Carvalho AF, Valence F, Thierry A (2015) New insights about diversity within Propionibacterium freudenreichii argue against its division into subspecies. Dairy Sci Technol  95:465-477

 

De Freitas R, Chuat V, Madec MN, Nero LA, Thierry A, Valence F, Carvalho AF (2015) Biodiversity of dairy Propionibacterium isolated from dairy farms in Minas Gerais, Brazil. Int J Food Microbiol  203:70-77

 

Essakhi, S, Cesbron, S, Fischer-Le Saux, M, Bonneau, S, Jacques, M A, Manceau, C (2015) Phylogenetic and variable-number tandem-repeat analyses identify nonpathogenic Xanthomonas arboricola lineages lacking the canonical type III secretion system. Appl Environ Microbiol  81:5395-5410

 

Fischer-Le Saux M, Bonneau S, Essakhi S, Manceau C, Jacques M-A (2015) Aggressive emerging pathovars of Xanthomonas arboricola represent widespread epidemic clones that are distinct from poorly pathogenic strains, as revealed by multilocus sequence typing. Applied Environ Microbiol  81: 4651-4668

 

Froissard M, Canonge M, Pouteaux M, Cintrat B, Mohand-Oumoussa S, Guillouet SE, Chardot T, Jacques N, Casaregola S (2015) Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts. BMC Evol Biol  15:97 

 

Jacques N, Zenouche A, Gunde-Cimerman N, Casaregola S (2015) Increased diversity in the genus Debaryomyces from Arctic glacier samples. Antonie Van Leeuwenhoek  107:487-501

 

Kempf F, Loux V, Germon P (2015) Genome sequences of two bovine mastitis-causing Escherichia coli strains. Genome announc  3:e00259-15

 

Lechat C, Lesage-Meessen L, Favel A (2015) A new species of Ijuhya, I. fournieri, from French Guiana. Ascomycete org  7:101-104

 

Le Maréchal C, Peton V, Plé C, Vroland C, Jardin J, Briard-Bion V, Durant G, Chuat V, Loux V, Foligné B, Deutsch SM, Falentin H, Jan G (2015). Surface proteins of Propionibaterium freudenreichii are involved in tis anti-inflammatory properties. Sci Direct  113:447–461 

 

Loux V, Mariadassou M, Almeida S, Chiapello H, Hammani A, Buratti J, Gendrault A, Barbe V, Aury JM, Deutsch SM, Parayre S, Madec MN, Chuat V, Jan G, Peterlongo P, Avezedo V, Le Loir Y, Falentin H (2015) Mutations and genomic islands explain the strain dependency of sugar utilization among 21 strains of Propionibacterium freudenreichiiBMC Genomics 16:296

 

Merabti R, Bekhouche F, Chuat V, Madec MN, Maillard MB, Bailly S, Thierry A, Valence F (2015) A large diversity of lactic acid bacteria species is involved in fermentation of wheat used for the manufacture of lemzeiet. Eur Food Res Technol  241:137–149

 

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S (2015) Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Sci Rep  5:11571 

 

Pesce C, Bolot S, Berthelot E, Bragard C, Cunnac S, Fischer-Le Saux M, Portier P, Arlat M, Gagnevin L, Jacques MA, Noël LD, Carrère S, Koebnik R(2015), Draft genome sequence of Xanthomonas translucens pv. graminis pathotype strain CFBP 2053. Genome Announc  3:e01174-15. 

 

Pesce C, Bolot S, Cunnac S, Portier P, Fischer-Le Saux M, Jacques A-M, Gagnevin M, Arlat M, Noël LD, Carrère S, Bragard C, Koebnik R (2015) High-quality draft genome sequence of the Xanthomonas translucens pv. cerealis pathotype strain CFBP 2541. Genome Announc  3:e01574-14 

 

Plé C, Breton J, Richoux R, Nurdin M, Deutsch SM, Falentin H, Hervé C, Chuat V, Lemée R, Maguin E, Jan G, de Guchte MV, Foligné B (2015) Combining selected immunomodulatory Propionibacterium freudenreichii and Lactobacillus delbrueckii strains: Reverse engineering development of an anti-inflammatory cheese. Mol Nutri Food Res  60:935-948. 

 

Pogačić T, Maillard MB, Leclerc A, Hervé C, Chuat V, Yee AL, Valence F, Thierry A. (2015) A methodological approach to screen diverse cheese-related bacteria for their ability to produce aroma compounds. Food Microbiol  46:145-153

 

Rainard P, Cunha P, Ledresseur M, Staub C, Touze J-L, Kempf F, Gilbert F B, Foucras G (2015) Antigen-specific mammary inflammation depends on the production of IL-17A and IFN-γ by bovine CD4+ T lymphocytes. Plos One  10:e0137755

 

Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD (2015) Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. BMC Genomics  16:975

 

Stielow JB, Lévesque CA, Seifert KA, Meyer W, Irinyi L, Smits D, Renfurm R, Verkley GJM, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AMS, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LAI, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, de Beer ZW, Barnes I, Duong TA, Wingfield MJ, de Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TAA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, de Vries M, Robert V (2015) One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcode. Persoonia  35:242–263

 

Thierry A, Valence F, Deutsch SM, Even S, Falentin H, Jan G, Le Loir Y, Gagnaire V (2015) Strain-to-strain differences within lactic and propionic acid bacteria species strongly impact the properties of cheese. Dairy science and technol   95:895-918

 

Valence F., Thierry A (2015) Les ressources microbiennes au service de nos aliments: une richesse préservée et explorée au sein du réseau CIRM. La diversité fonctionnelle explorée grâce au criblage haut débit.  Innovations Agronomiques  44:99-108

 

Welti S, Moreau PA, Decock C, Danel C, Duhal N, Favel A, Courtecuisse R (2015) Oxygenated lanostane-type triterpenes profiling in laccate Ganoderma chemotaxonomy. Mycological Res  14:45

 

Zhou S, Raouche S, Grisel S, Navarro D, Sigoillot JC, Herpoël-Gimbert I (2015) Solid-state fermentation in multi-well plates to assess pretreatment efficiency of rot fungi on lignocellulose biomass. Microbial Biotechnol  8:940-949

2014

Bull CT, Coutinho TA, Denny TP, Firrao G, Fischer-Le Saux M, Li X, Saddler GS, Scortichini M, Stead DE, Takikawa Y (2014) List of new names of plant pathogenic bacteria (2011-2012). J Plant Pathol 96:223-226

 

Clement B, Yuille M, Zaltoukal K, Wichmann HE, Anton G, Parodi B, Kozera L, Brechot C, Hofman P, Dagher G (2014) Public biobanks: calculation and recovery of costs. Sci Transl Med 6:261-245

 

Jacques N, Louis-Mondesir C, Coton M, Coton E, Casaregola S (2014) Two novel Saccharomycopsis species isolated from black olive brines in France and a tropical plant in French Guiana. Description of Saccharomycopsis olivae f. a., sp. nov. and Saccharomycopsis guyanensis f. a., sp. nov. Reassignment of Candida amapae to Saccharomycopsis amapae f. a., comb. nov., Candida lassenensis to Saccharomycopsis lassenensis f. a., comb. nov. and Arthroascus babjevae to Saccharomycopsis babjevae f. a., comb. nov. Int J Syst Evol Microbiol 64:2169-2175

 

Jebava I, Chuat V, Lortal S, Valence F (2014) Peptidoglycan hydrolases as species-specific markers to differentiate Lactobacillus helveticus from Lactobacillus gallinarum and other closely related homofermentative lactobacilli. Curr Microbiol 68:551-557

 

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A,  Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C (2014) The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels 7:66

 

Lortal S, Licitra G, Valence F (2014) Wooden Tools: Reservoirs of Microbial Biodiversity in Traditional Cheesemaking. Cheese and Microbes. Donnelly C (ed), pp 167-176. Washington, DC: ASM Press

 

Pogačić T, Chuat V, Madec MN, Samaržija D, Lortal S, Valence F (2014) Phenotypic traits of genetically closely related Leuconostoc spp. Int Dairy J 39:96-101

 

Pogačić T, Maillard MB, Leclerc A, Herve C, Chuat V, Yee A, Valence F, Thierry A (2014) A methodological approach to screen diverse cheese-related bacteria for their ability to produce aroma compounds. Food Microbiol 46:145-153

 

Stackebrandt E, Smith D, Casaregola S, Varese GC, Verkleij G, Lima N, Bridge P (2014). Deposit of microbial strains in public service collections as part of the publication process to underpin good practice in science. Springerplus 3:208

2013

Bedrani L, Helloin E, Guyot N, Nys Y (2013a) Systemic administration of lipopolysaccharide in laying hens stimulates antimicrobial properties of egg white against Staphylococcus aureusVet Immunol Immunopathol 152:225-236

 

Bedrani L, Helloin E, Guyot N, Rehault-Godbert S, Nys Y (2013b) Passive maternal exposure to environmental microbes selectively modulates the innate defences of chicken egg white by increasing some of its antibacterial activities. BMC Microbiol 13:128

 

Bolot S, Munoz Bodnar A, Cunnac S, Ortiz E, Szurek B, Noel LD, Arlat M, Jacques MA, Gagnevin L, Portier P, Fischer-Le Saux M, Carrere S, Koebnik R (2013) Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642. Genome Announc 1

 

Casaregola S, Barth G (2013) Transposable elements and their activities in Y. lipolytica. In Yarrowia lipolyticaGenetics, Genomics, Physiology, Barth G (ed), Vol. 1, pp 57-77. Heidelberg: Springer

 

Casaregola S, Jacques N, Louis-Mondesir C, Coton M, Coton E (2013) Citeromyces nyonsensis sp. nov., a novel yeast species isolated from black olive brine. Int J Syst Evol Microbiol 63:3086-3090

 

Darrasse A, Bolot S, Serres-Giardi L, Charbit E, Boureau T, Fisher-Le Saux M, Briand M, Arlat M, Gagnevin L, Koebnik R Noël LD, Carrère S, Jacques MA. (2013) High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119. Genome Announc 1

 

Darrasse A, Carrere S, Barbe V, Boureau T, Arrieta-Ortiz M, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guerin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noel L, Pieretti I, Poussier S, Pruvost O, Robene-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys M-A, Verdier V, Verniere C, Arlat M, Manceau C, Jacques M-A (2013) Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics 14:1471-2164

 

de Freitas R, Luiz LM, Alves MP, Valence-Bertel F, Nero LA, de Carvalho AF (2013) Selective enumeration of propionibacteria in Emmental-type cheese using Petrifilm aerobic count plates added to lithium glycerol broth. J Dairy Res 80:270-275

 

Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C (2013) Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin. Genome Announc 1

 

Fendri I, Ben Hassena A, Grosset N, Barkallah M, Khannous L, Chuat V, Gautier M, Gdoura R (2013) Genetic diversity of food-isolated salmonella strains through Pulsed Field Gel Electrophoresis (PFGE) and Enterobacterial Repetitive Intergenic Consensus (ERIC-PCR). PLoS One 8:e81315

 

Mhedbi-Hajri N, Hajri A, Boureau T, Darrasse A, Durand K, Brin C, Fischer-Le Saux M, Manceau C, Poussier S, Pruvost O, Lemaire C, Jacques MA (2013) Evolutionary history of the plant pathogenic bacterium Xanthomonas axonopodisPLoS One 8:e58474

 

Rehault-Godbert S, Labas V, Helloin E, Herve-Grepinet V, Slugocki C, Berges M, Bourin MC, Brionne A, Poirier JC, Gautron J, Coste F, Nys Y (2013) Ovalbumin-related protein X is a heparin-binding OV-serpin exhibiting antimicrobial activities. J Biol Chem 288:17285-17295

 

Vinogradov E, Valence F, Maes E, Jebava I, Chuat V, Lortal S, Grard T, Guerardel Y, Sadovskaya I (2013) Structural studies of the cell wall polysaccharides from three strains of Lactobacillus helveticus with different autolytic properties: DPC4571, BROI, and LH1. Carbohydr Res 379:7-12

 

Weiss S, Samson F, Navarro D, Casaregola S (2013) YeastIP: a database for identification and phylogeny of Saccharomycotina yeasts. FEMS Yeast Res 13:117-125

2012

Berrin JG, Navarro D, Couturier M, Olive C, Grisel S, Haon M, Taussac S, Lechat C, Courtecuisse R, Favel A, Coutinho PM, Lesage-Meessen L (2012) Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion. Appl Environ Microbiol 78:6483-6490

 

Bourdichon F, Casaregola S, Farrokh C, Frisvad JC, Gerds ML, Hammes WP, Harnett J, Huys G, Laulund S, Ouwehand A, Powell IB, Prajapati JB, Seto Y, Ter Schure E, Van Boven A, Vankerckhoven V, Zgoda A, Tuijtelaars S, Hansen EB (2012) Food fermentations: microorganisms with technological beneficial use. Int J Food Microbiol 154:87-97

 

Bull CT, De Boer SH, Denny TP, Firrao G, Fischer-Le Saux M, Saddler GS, Scortichini M, Stead DE, Takikawa Y (2012) List of new names of plant pathogenic bacteria (2008-2010). J Plant Pathol 94:21-27

 

Couturier M, Navarro D, Olive C, Chevret D, Haon M, Favel A, Lesage-Meessen L, Henrissat B, Coutinho PM, Berrin JG (2012) Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydisBMC Genomics 13:57

 

Erny C, Raoult P, Alais A, Butterlin G, Delobel P, Matei-Radoi F, Casaregola S, Legras JL (2012) Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the northern european wine-making environment. Appl Environ Microbiol 78:3256-3265

 

Hajri A, Pothier JF, Fischer-Le Saux M, Bonneau S, Poussier S, Boureau T, Duffy B, Manceau C (2012) Type three effector gene distribution and sequence analysis provide new insights into the pathogenicity of plant-pathogenic Xanthomonas arboricolaAppl Environ Microbiol 78:371-384

 

Hamza AA, Robene-Soustrade I, Jouen E, Lefeuvre P, Chiroleu F, Fischer-Le Saux M, Gagnevin L, Pruvost O (2012) Multilocus sequence analysis- and amplified fragment length polymorphism-based characterization of xanthomonads associated with bacterial spot of tomato and pepper and their relatedness to Xanthomonas species. System Applied Microbiol 35:183-190 

 

Louis VL, Despons L, Friedrich A, Martin T, Durrens P, Casaregola S, Neuveglise C, Fairhead C, Marck C, Cruz JA, Straub ML, Kugler V, Sacerdot C, Uzunov Z, Thierry A, Weiss S, Bleykasten C, De Montigny J, Jacques N, Jung P, Lemaire M, Mallet S, Morel G, Richard GF, Sarkar A, Savel G, Schacherer J, Seret ML, Talla E, Samson G, Jubin C, Poulain J, Vacherie B, Barbe V, Pelletier E, Sherman DJ, Westhof E, Weissenbach J, Baret PV, Wincker P, Gaillardin C, Dujon B, Souciet JL (2012) Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization. G3 (Bethesda) 2:299-311

 

Mallet S, Weiss S, Jacques N, Leh-Louis V, Sacerdot C, Casaregola S (2012) Insights into the Life Cycle of Yeasts from the CTG Clade Revealed by the Analysis of the Millerozyma (Pichia) farinosa Species Complex. PLoS One 7:e35842

 

Navarro D, Favel A, Chabrol O, Pontarotti P, Haon M, Lesage-Meessen L (2012) FunGene-DB: a web-based tool for Polyporales strains authentication. J Biotechnol 161:383-386

 

Ravalason H, Grisel S, Chevret D, Favel A, Berrin JG, Sigoillot JC, Herpoel-Gimbert I (2012) Fusarium verticillioides secretome as a source of auxiliary enzymes to enhance saccharification of wheat straw. Bioresour Technol 114:589-596

 

Sunder S, Haguenoer E, Bouvet D, Lissandre S, Bree A, Perrotin D, Helloin E, Lanotte P, Schouler C, Guillon A (2012) Life-threatening Escherichia coli cellulitis in patients with haematological malignancies. J Med Microbiol 61:1324-1327

 

Welti S, Moreau P-A, Favel A, Courtecuisse R, Haon M, Navarro D, Taussac S, Lesage-Meessen L (2012) Molecular phylogeny of Trametes and related genera, and description of a new genus Leiotrametes. Fungal Divers 55:47-64

 

Zagorec M, Champomier-Vergès M, Renault P, Valence F, Le Loir Y, Montel MC (2012) Ecosystèmes microbiens et préservation des aliments. Innovation agronomiques 24:57-77

 

Zygmunt MS, Jacques I, Bernardet N, Cloeckaert A (2012) Lipopolysaccharide heterogeneity in the atypical group of novel emerging Brucella species. Clin Vaccine Immunol 19:1370-1373

2011

Casaregola S, Weiss S, Morel G (2011) New perspectives in hemiascomycetous yeast taxonomy. C R Biol 334:590-598

 

Couturier M, Haon M, Coutinho PM, Henrissat B, Lesage-Meessen L, Berrin JG (2011) Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomass. Appl Environ Microbiol 77:237-246

 

Dalmasso M, Nicolas P, Falentin H, Valence F, Tanskanen J, Jatila H, Salusjarvi T, Thierry A (2011) Multilocus sequence typing of Propionibacterium freudenreichiiInt J Food Microbiol 145:113-120

 

Dequin S, Casaregola S (2011) The genomes of fermentative Saccharomyces. C R Biol 334:687-693

 

Fargier E, Fischer-Le Saux M, Manceau C (2011) A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species. Syst Appl Microbiol 34:156-165

 

Fischer-Le Saux M, Ramette A, Frapolli M, Gruffaz C, Meyer JM, Defago G, Sutra L, Moenne-Loccoz Y (2011) Pseudomonas protegens sp nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin. System Applied Microbiol 34:180-188 

 

Galeote V, Bigey F, Beyne E, Novo M, Legras JL, Casaregola S, Dequin S (2011) Amplification of a Zygosaccharomyces bailii DNA segment in wine yeast genomes by extrachromosomal circular DNA formation. PLoS One 6:e17872

 

Gautron J, Helloin E, Labs V, Nys Y, Rehault-Godbert S, Slugocki C (2011) Fraction de protéines et peptides issus du blanc d'oeuf et protéine issue du blanc d'oeuf et leur utilisation comme agent anti-listeria   Brevet/Patent

 

Hebert A, Casaregola S, Beckerich JM (2011) Biodiversity in sulfur metabolism in hemiascomycetous yeasts. FEMS Yeast Res 11:366-378

 

Jebava I, Plockova M, Lortal S, Valence F (2011) The nine peptidoglycan hydrolases genes in Lactobacillus helveticus are ubiquitous and early transcribed. Int J Food Microbiol 148:1-7

 

Lesage-Meessen L, Haon M, Uzan E, Levasseur A, Piumi F, Navarro D, Taussac S, Favel A, Lomascolo A (2011) Phylogeographic relationships in the polypore fungus Pycnoporus inferred from molecular data. FEMS Microbiol Lett 325: 37-48

 

Lomascolo A, Uzan-Boukhris E, Herpoel-Gimbert I, Sigoillot JC, Lesage-Meessen L (2011) Peculiarities of Pycnoporus species for applications in biotechnology. Appl Microbiol Biotechnol 92:1129-1149

 

N'Guessan K F, Brou K, Jacques N, Casaregola S, Dje KM (2011) Identification of yeasts during alcoholic fermentation of tchapalo, a traditional sorghum beer from Cote d'Ivoire. Antonie Van Leeuwenhoek 99:855-864

 

Ramette A, Frapolli M, Fischer-Le Saux M, Gruffaz C, Meyer JM, Defago G, Sutra L, Moenne-Loccoz Y (2011) Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin. Syst Appl Microbiol 34:180-188

 

Safadi RA, Talarek N, Jacques N, Aigle M (2011) Yeast prions: could they be exaptations? The URE2/[URE3] system in Kluyveromyces lactisFEMS Yeast Res 11:151-153

 

Uzan E, Portet B, Lubrano C, Milesi S, Favel A, Lesage-Meessen L, Lomascolo A (2011) Pycnoporus laccase-mediated bioconversion of rutin to oligomers suitable for biotechnology applications. Appl Microbiol Biotechnol 90:97-105

2010

Bull CT, De Boer SH, Denny TP, Firrao G, Fischer-Le Saux M, Saddler GS, Scortichini M, Stead DE, Takikawa Y (2010a) Comprehensive list of names of plant pathogenic bacteria, 1980-2007. J Plant Pathol 92:551-592

 

Bull CT, Manceau C, Lydon J, Kong H, Vinatzer BA, Fischer-Le Saux M (2010b) Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended species Pseudomonas cannabina (ex Sutic & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999. Syst Appl Microbiol 33:105-115

 

Dalmasso M, Nicolas P, Falentin H, Valence F, Tanskanen J, Jatila H, Salusjärvi T, Thierry A (2010) Multilocus sequence typing of Propionibacterium freudenreichii. Int J Food Microbiol 145:113-120

 

Jacques N, Sacerdot C, Derkaoui M, Dujon B, Ozier-Kalogeropoulos O, Casaregola S (2010) Population polymorphism of nuclear mitochondrial DNA insertions reveals widespread diploidy associated with loss of heterozygosity in Debaryomyces hanseniiEukaryot Cell 9:449-459

 

Maze A, Boel G, Zuniga M, Bourand A, Loux V, Yebra MJ, Monedero V, Correia K, Jacques N, Beaufils S, Poncet S, Joyet P, Milohanic E, Casaregola S, Auffray Y, Perez-Martinez G, Gibrat JF, Zagorec M, Francke C, Hartke A, Deutscher J (2010) Complete genome sequence of the probiotic Lactobacillus casei strain BL23. J Bacteriol 192:2647-2648

 

Navarro D, Couturier M, da Silva GG, Berrin JG, Rouau X, Asther M, Bignon C (2010) Automated assay for screening the enzymatic release of reducing sugars from micronized biomass. Microb Cell Fact 9:58

 

Uzan E, Nousiainen P, Balland V, Sipila J, Piumi F, Navarro D, Asther M, Record E, Lomascolo A (2010) High redox potential laccases from the ligninolytic fungi Pycnoporus coccineus and Pycnoporus sanguineus suitable for white biotechnology: from gene cloning to enzyme characterization and applications. J Appl Microbiol 108:2199-2213

2009

Alberto F, Navarro D, de Vries RP, Asther M, Record E (2009) Technical advance in fungal biotechnology: development of a miniaturized culture method and an automated high-throughput screening. Lett Appl Microbiol 49:278-282

 

Barrio MB, Grillo MJ, Munoz PM, Jacques I, Gonzalez D, de Miguel MJ, Marin CM, Barberan M, Letesson JJ, Gorvel JP, Moriyon I, Blasco JM, Zygmunt MS (2009) Rough mutants defective in core and O-polysaccharide synthesis and export induce antibodies reacting in an indirect ELISA with smooth lipopolysaccharide and are less effective than Rev 1 vaccine against Brucella melitensis infection of sheep. Vaccine 27:1741-1749

 

Goh YJ, Azcárate-Peril MA, O'Flaherty S, Durmaz E, Valence F, Jardin J, Lortal S, Klaenhammer TR (2009) Development and application of a upp-based counterselective gene replacement system for the study of the S-layer protein SlpX of Lactobacillus acidophilus NCFM. Appl Environ Microbiol 75:3093-3105

 

Grillo MJ, Marin CM, Barberan M, de Miguel MJ, Laroucau K, Jacques I, Blasco JM (2009) Efficacy of bp26 and bp26/omp31 B. melitensis Rev.1 deletion mutants against Brucella ovis in rams. Vaccine 27:187-191

 

Jacques N, Mallet S, Casaregola S (2009) Delimitation of the species of the Debaryomyces hansenii complex by intron sequence analysis. Int J Syst Evol Microbiol 59:1242-1251

 

Maquart M, Le Fleche P, Foster G, Tryland M, Ramisse F, Djonne B, Al Dahouk S, Jacques I, Neubauer H, Walravens K, Godfroid J, Cloeckaert A, Vergnaud G (2009) MLVA-16 typing of 295 marine mammal Brucella isolates from different animal and geographic origins identifies 7 major groups within Brucella ceti and Brucella pinnipedialisBMC Microbiol 9:145

 

Mounier J, Monnet C, Jacques N, Antoinette A, Irlinger F (2009) Assessment of the microbial diversity at the surface of Livarot cheese using culture-dependent and independent approaches. Int J Food Microbiol 133:31-37

 

Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, Cambon B, Legras JL, Wincker P, Casaregola S, Dequin S (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci U S A 106:16333-16338

 

Poidevin L, Levasseur A, Paes G, Navarro D, Heiss-Blanquet S, Asther M, Record E (2009) Heterologous production of the Piromyces equi cinnamoyl esterase in Trichoderma reesei for biotechnological applications. Lett Appl Microbiol 49:673-678

 

Reboutier D, Piednoel M, Boisnard S, Conti A, Chevalier V, Florent M, Gibot-Leclerc S, Da Silva B, Chastin C, Fallague K, Favel A, Noel T, Ruprich-Robert G, Chapeland-Leclerc F, Papon N (2009) Combination of different molecular mechanisms leading to fluconazole resistance in a Candida lusitaniae clinical isolate. Diagn Microbiol Infect Dis 63:188-193

 

Sohier D, Le Dizes A-M, Thuault D, Neuveglise C, Cotton E, Casaregola S (2009) Important genetic diversity revealed by inter-LTR PCR fingerprinting of Kluyveromyces marxianus and Debaryomyces hansenii strains from French traditional cheeses. Dairy Sci Technol 89:569-581

 

Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Segurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuveglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goeffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E (2009) Comparative genomics of protoploid Saccharomycetaceae. Genome Res 19:1696-1709

2008

Herpoel-Gimbert I, Margeot A, Dolla A, Jan G, Molle D, Lignon S, Mathis H, Sigoillot JC, Monot F, Asther M (2008) Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains. Biotechnol Biofuels 1:18

 

Jacques N, Casaregola S (2008) Safety assessment of dairy microorganisms: the hemiascomycetous yeasts. Int J Food Microbiol 126:321-326

 

Konstantinov SR, Smidt H, de Vos WM, Bruijns SC, Singh SK, Valence F, Molle D, Lortal S, Altermann E, Klaenhammer TR, van Kooyk Y (2008). S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions. Proc Natl Acad Sci USA 105:19474-19479

 

Mskhiladze L, Kutchukhidze J, Chincharadze D, Delmas F, Elias R, Favel A (2008) In vitro antifungal and antileishmanial activities of steroidal saponins from Allium leucanthum C. Koch -- a Caucasian endemic species. Georgian Med News:39-43

 

Sacerdot C, Casaregola S, Lafontaine I, Tekaia F, Dujon B, Ozier-Kalogeropoulos O (2008) Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts. FEMS Yeast Res 8:846-857

 

Suraud V, Jacques I, Olivier M, Guilloteau LA (2008) Acute infection by conjunctival route with Brucella melitensis induces IgG+ cells and IFN-gamma producing cells in peripheral and mucosal lymph nodes in sheep. Microbes Infect 10:1370-1378

2007

Al Dahouk S, Fleche PL, Nockler K, Jacques I, Grayon M, Scholz HC, Tomaso H, Vergnaud G, Neubauer H (2007) Evaluation of Brucella MLVA typing for human brucellosis. J Microbiol Methods 69:137-145

 

Cholet O, Henaut A, Casaregola S, Bonnarme P (2007) Gene expression and biochemical analysis of cheese-ripening yeasts: focus on catabolism of L-methionine, lactate, and lactose. Appl Environ Microbiol 73:2561-2570

 

Foster G, Osterman BS, Godfroid J, Jacques I, Cloeckaert A (2007) Brucella ceti sp. nov. and Brucella pinnipedialis sp. nov. for Brucella strains with cetaceans and seals as their preferred hosts. Int J Syst Evol Microbiol 57:2688-2693

 

Giraud F, Dupont J, Haon M, Bouzid O, Alibeu O, Navarro D, Sage L, Seigle-Murandi F, Asther M, Lesage-Meessen L (2007) Phylogenetic analysis of the Aspergillus niger aggregate in relation to feruloyl esterase activity. Res Microbiol 158:413-419

 

Jacques I, Grayon M, Verger JM (2007a) Oxidative metabolic profiles of Brucella strains isolated from marine mammals: contribution to their species classification. FEMS Microbiol Lett 270:245-249

 

Jacques I, Verger JM, Laroucau K, Grayon M, Vizcaino N, Peix A, Cortade F, Carreras F, Guilloteau LA (2007b) Immunological responses and protective efficacy against Brucella melitensis induced by bp26 and omp31 B. melitensis Rev.1 deletion mutants in sheep. Vaccine 25:794-805

2006

Bouzid O, Record E, Asther M, Haon M, Navarro D, Lesage-Meessen L (2006) Exploration of members of Aspergillus sections Nigri, Flavi, and Terrei for feruloyl esterase production. Can J Microbiol 52:886-892

 

Bussereau F, Casaregola S, Lafay JF, Bolotin-Fukuhara M (2006) The Kluyveromyces lactis repertoire of transcriptional regulators. FEMS Yeast Res 6:325-335

 

Coton E, Coton M, Levert D, Casaregola S, Sohier D (2006) Yeast ecology in French cider and black olive natural fermentations. Int J Food Microbiol 108:130-135

 

Dannaoui E, Abdul M, Arpin M, Michel-Nguyen A, Piens MA, Favel A, Lortholary O, Dromer F (2006) Results obtained with various antifungal susceptibility testing methods do not predict early clinical outcome in patients with cryptococcosis. Antimicrob Agents Chemother 50:2464-2470

 

Kagkli DM, Bonnarme P, Neuveglise C, Cogan TM, Casaregola S (2006a) L-methionine degradation pathway in Kluyveromyces lactis: identification and functional analysis of the genes encoding L-methionine aminotransferase. Appl Environ Microbiol 72:3330-3335

 

Kagkli DM, Tache R, Cogan TM, Hill C, Casaregola S, Bonnarme P (2006b) Kluyveromyces lactis and Saccharomyces cerevisiae, two potent deacidifying and volatile-sulphur-aroma-producing microorganisms of the cheese ecosystem. Appl Microbiol Biotechnol 73:434-442

 

Portier P, Fischer-Le Saux M, Mougel C, Lerondelle C, Chapulliot D, Thioulouse J, Nesme X (2006) Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers. Appl Environ Microbiol 72:7123-7131

 

Suleau A, Gourdon P, Reitz-Ausseur J, Casaregola S (2006) Transcriptomic analysis of extensive changes in metabolic regulation in Kluyveromyces lactis strains. Eukaryot Cell 5:1360-1370

2005

Favel A, Kemertelidze E, Benidze M, Fallague K, Regli P (2005) Antifungal activity of steroidal glycosides from Yucca gloriosa L. Phytother Res 19:158-161

 

Fickers P, Fudalej F, Le Dall MT, Casaregola S, Gaillardin C, Thonart P, Nicaud JM (2005) Identification and characterisation of LIP7 and LIP8 genes encoding two extracellular triacylglycerol lipases in the yeast Yarrowia lipolytica. Fungal Genet Biol 42:264-274

 

Lamidi M, DiGiorgio C, Delmas F, Favel A, Eyele Mve-Mba C, Rondi ML, Ollivier E, Nze-Ekekang L, Balansard G (2005) In vitro cytotoxic, antileishmanial and antifungal activities of ethnopharmacologically selected Gabonese plants. J Ethnopharmacol 102:185-190

 

Neuveglise C, Chalvet F, Wincker P, Gaillardin C, Casaregola S (2005) Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings. Eukaryot Cell 4:615-624

 

Noel T, Favel A, Michel-Nguyen A, Goumar A, Fallague K, Chastin C, Leclerc F, Villard J (2005) Differentiation between atypical isolates of Candida lusitaniae and Candida pulcherrima by determination of mating type. J Clin Microbiol 43:1430-1432

 

Samson R, Legendre JB, Christen R, Fischer-Le Saux M, Achouak W, Gardan L (2005) Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov. Int J Syst Evol Microbiol 55:1415-1427

 

Suleau A, Jacques N, Reitz-Ausseur J, Casaregola S (2005) Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis. FEMS Yeast Res 5:595-604

2004

Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuveglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisrame A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wesolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL (2004) Genome evolution in yeasts. Nature 430:35-44

 

Favel A, Michel-Nguyen A, Datry A, Challier S, Leclerc F, Chastin C, Fallague K, Regli P (2004) Susceptibility of clinical isolates of Candida lusitaniae to five systemic antifungal agents. J Antimicrob Chemother 53:526-529

 

Rojas AM, de Los Rios JE, Fischer-Le Saux M, Jimenez P, Reche P, Bonneau S, Sutra L, Mathieu-Daude F, McClelland M (2004) Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots. Int J Syst Evol Microbiol 54:2217-2222