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Menu Logo Principal Agence française pour la biodiversité Université de Pau et des Pays de l'Adour Agrocampus Ouest

Observatoire de Recherche en Environnement Poissons Diadromes dans les Fleuves Côtiers

Publications emblématiques

Ouvrages

2012

Parent E., Rivot E. (2012). Introduction to Hierarchical Bayesian Modeling for Ecological Data. Chapman & Hall/CRC Press, Col. Applied Environmental Statistics

2009

Prévost, E. & Rivot, E. (2009). Aide à la décision pour la régulation de l’exploitation des populations naturelles de saumon atlantique (Salmo salar). De Turckheim, E. (Coordinateur) ; Hubert, B. (Coordinateur) ; Messean, A. (Coordinateur). Concevoir et construire la décision. Démarches en agriculture, agroalimentaire et espace rural. Versailles (FRA) : Editions Quae ; Update Sciences et Technologies. 2009, : 241-262.

2006

Ombredane D., Caquet T. Haury J. (2006). Les indicateurs biologiques : des outils désormais incontournables pour estimer la qualité des rivières en zone rurale. 31- 48 In P. Mérot (Coord) "Qualité de l'eau en milieu rural - Savoirs et pratiques dans les bassins versants ". Collection Update Sciences & Technologies, INRA Ed. Paris. 344 p.

2005
Coudreuse J., Haury J., Bardat J., Rebillard J.-P. (2005). Les bryophytes aquatiques et supra-aquatiques. Clé d'identification pour la mise en œuvre de l'Indice Biologique Macrophytique en Rivière. Les Etudes de l'Agence de l'Eau Adour-Garonne, Toulouse: 132 p

Publications

2013

Kacem A., Baglinière J-L. et Meunier F-J. (2013). Resorption of scales in Atlantic salmon (Salmo salar) during  its anadromous migration: a quantitative study. Cybium 2013, 37(3): 199-206
Le Gentil J., Launey S., Marchand F., Ombredane D. and Bagliniere J.-L. (2013). Prediction of biological form at the adult stage of brown trout Salmo trutta using morphological or colorimetric criteria in migrating juveniles. Journal of Fish Biology. doi: 10.1111/jfb.12078
Martin, J., Bareille, G., Berail, S., Pecheyran, C., Gueraud, F., Lange, F., Daverat, F., Bru, N., Beall, E., Barracou, D., Donard, O. (2013). Persistence of a southern Atlantic salmon population: diversity of natal origins from otolith elemental and Sr isotopic signatures. Canadian Journal of Fisheries and Aquatic Sciences, 70 (2), 182-197. DOI: 10.1139/cjfas-2012-0284
Piou C., Prévost E., 2013. Contrasting effects of climate change in continental vs. oceanic environments on population persistence and microevolution of Atlantic salmon. Global Change Biology, 19 : 711-723.
Perrier C., J.L. Baglinière, G. Evanno. 2013. Understanding admixture patterns in supplemented populations: a case study combining molecular analyses and temporally explicit simulations in Atlantic salmon. Evolutionary Applications, 6, 218-230.
Gaigher A., Launey S., Lasne E., Besnard A.-L., Evanno G. 2013. Characterization of thirteen microsatellite markers in river and brook lampreys (Lampetra fluviatilis and L. planeri). Conservation Genetics Resources, 5, 141-143.
Perrier C., R Guyomard, JL Baglinière, N Nikolic, Evanno G. 2013. Changes in the genetic structure of Atlantic salmon populations over four decades reveal substantial impacts of stocking and potential resiliency. Ecology and Evolution, 7, 2334-2349.
Trancart, T, A Acou, E De Oliveira, and E Feunteun. 2013. “Forecasting Animal Migration Using SARIMAX: An Efficient Means of Reducing Silver Eel Mortality Caused by Turbines.” Endangered Species Research 21 (2) (August 30): 181–190. doi:10.3354/esr00517.
Roussel J.M., Perrier C., Jaakkoerkinaro§, Eeroniemel€a§, CUNJAK R., Huteau D. et RIERA P.(2013). Stable isotope analyses on archived fish scales reveal the long-term effect of nitrogen loads on carbon cycling in rivers.

2012

Acolas, M.-L., Labonne, J., Baglinière, J.-L., Roussel, J.-M. (2012). The role of body size versus growth on the decision to migrate : a case study with Salmo trutta. Naturwissenschaften , 99 (1), 11-21. DOI:10.1007/s00114-011-0861-5
Buoro M., Giménez O., Prévost E., (2012). Assessing adaptive phenotypic plasticity by means of conditional strategies from empirical data: the latent model. Evolution.environmental threshold model. Evolution , 66 (4), 996-1009. DOI:10.1111/j.1558-5646.2011.01484.x
Buoro, M., Prévost, E., Gimenez, O. (2012). Digging through model complexity : using hierarchical models to uncover evolutionary processes in the wild. Journal of Evolutionary Biology , 25 (10), 2077-2090. DOI:10.1111/j.1420-9101.2012.02590.x
Côte J. Roussel J-M., Le Cam S., Bal G, Evanno G. (2012) : Population differences in response to hypoxic stress in Atlantic salmon. Journal of Evolutionary Biology, 2012, 25 : 2596-2606.
Forget G., Carreau C., LeCoeur D., and Bernez I. 2012. Ecological restoration of headwaters in a bocage landscape : A passive approach taking hedges networks into account for the riparian tree management. Ecological restoration, 21: 96-104.
Geffroy, B., Bardonnet, A. (2012). Differential effects of behaviour, propensity to migrate and recruitment season on glass eels and elvers'growing performance. Ecology of Freshwater Fish , 21 (3), 469-482. DOI:10.1111/j.1600-0633.2012.00566.x
Geffroy, B., Fostier, A., Guiguen, Y., Bardonnet, A. (2012). Unusual cases of adult intersexuality in the European eel Anguilla anguilla. Sexual Development , 6 (6), 316-319. DOI:10.1159/000343781
Perrier, C. ; Guyomard, R. ; Baglinière, J.-L. ; Evanno, G.(2012). Determinants of hierarchical genetic structure in Atlanticsalmon populations: environmental factors vs. anthropogenic influences. Molecular Ecology, 0962-1083, 2012, 20 : 4231-4245.
Piou C, Prévost E (2012). A demo-genetic individual-based model for Atlantic salmon populations: Model structure, parameterization and sensitivity. Ecological Modelling 231 (2012) 37– 52
Piou C, Prévost E (2012). Contrasting effects of climate change in continental vs. oceanic environments on population persistence and microevolution of Atlantic salmon. Global Change Biology (2012), doi: 10.1111/gcb.12085

2011

Acou A., Rivot E., van Gils J.A., Legault A., Ysnel F., Feunteun E., (2011). Habitat carrying capacity is reached for European eel in a small coastal catchment: ecological evidence and implications for eel stock management. Freshwater Biology, accepted.
Bal G, Rivot E, Prévost E, Piou C, Baglinière JL. (2011). Effect of water temperature and density of salmonid juveniles on growth of young-of-the-year Atlantic salmon Salmo salar L. Journal of Fish Biology, doi:10.1111/j.1095-8649.2011.02902.x
Brun, M. ; Abraham, C. ; Jarry, M. ; Dumas, J. ; Lange, F. ; Prévost, E. (2011). Estimating an homogeneous series of a population abundance indicator despite changes in data collection procedure : a hierarchical Bayesian modelling approach. Ecological Modelling. 2011, 222 (15) : 1069-1079
Bureau du Colombier, S.; Bolliet, V.; Lambert, P.; Bardonnet, A (2011). Metabolic loss of mass in glass eels at different salinities according to their propensity to migrate. Estuarine, Coastal and Shelf Science. 2011, 93 (1) : 1-6
Delcourt, J.; Ylieff, M.; Bolliet, V. (2011). Video tracking in the extreme : a new possibility for tracking nocturnal underwater transparent animals with elastomer tags. Behavior Research Methods. 2011, 43 (2) : 590-600
Forget G, Bernez I. (2011). Assessment of the success of headwater restoration through the vegetation diversity analysis of four Oir river’s tributaries (Normandy, France). Procedia Environmental science 9, 47-53.
Gascuel-Odoux C., Aurousseau P., Doray T., Squividant H., Macary F., Uny D., Grimaldi C. (2011) Incorporating landscape features in a plot tree structure to represent surface flow connectivity in rural catchments. Hydrological Processes. 25, 3625–3636
Grimardias D., Merchermek N., Chébaud J., Gaudin P., Jarry M., Beall E., (2011). Effects of habitat on the reproductive success of sneakers and on interactions among spawners in Atlantic salmon (Salmo salar L.). Journal of Fish Biology, in press.
Nikolic N., Baglinière J-L., Rigaud C., Gardes C., Masquilier M-L., Taverny C., (2011). Bibliometric analysis of diadromous fish research from 1970s to 2010 - a case study of seven species. Scientometrics, DOI 10.1007/s11192-011-0422-x
Perrier C, Daverat F., Evanno G., Pécheyran C., Baglinière J-L., Roussel J-M., (2011). Coupling genetic and otolith microchemistry analyses to identify river-born fish with hatchery pedigrees in stocked Atlantic salmon populations. Canadian Journal of Fisheries and Aquatic Sciences, in press.
Perrier C. , Grandjean F., Le Gentil J. , Cherbonnel C. and Evanno G.(2011). A species-specific microsatellite marker to discriminate European Atlantic salmon, brown trout, and their hybrids. Conservation Genet Resour (2011) 3:131–133
Tentelier, C.; Piou, C. (2011). Obstacles to migration constrain nest distribution of Atlantic salmon. Ecology of Freshwater Fish. 2011, 20 (3) : 400-408

2010

Buoro M.; Prévost E.; Gimenez O. (2010). Investigating evolutioary trade-offs in wild populations of atlantic salmon (salmo salar): Incorporating detection probabilities and individualities heterogeneity. Evolution, 64: 2629-2642.
Castillo A. G. F., Beall E., Moran P., Martinez J.L., Garcia-Vazquez E., (2010). Indirect benefits for female salmon from mating with brown trout. Journal of Heredity 101 (4), 461-468. doi:10.1093/jhered/esq042
Chevalet C., Nikolic N. (2010). Distribution of coalescence times and distances between microsatellite alleles with changing effective population size. Theoretical Population Biology 2010, vol. 77, no3, pp. 152-163
"Grimardias D., Merchermek N., Chébaud J., Gaudin P., Jarry M., Beall E., (2010). Effects of habitat on the reproductive success of sneakers and on interactions among spawners in Atlantic salmon (Salmo salar L.). Journal of Fish Biology. Journal of Fish Biology Volume 77, Issue 10, pages 2460–2466. DOI: 10.1111/j.1095-8649.2010.02808.x
Grimardias D., Merchermek N., Manicki A., Garnier J., Gaudin P., Jarry M., Beall E., (2010). Reproductive success of mature male parr of Atlantic salmon (Salmo salar) in a small river, the Nivelle: influence of shelters. Ecology of Freshwater Fish. 2010, 19 (4) : 510-519. Doi: 10.1111/j.1600-0633.2010.00421.x
Lasne E, Sabatié M-R, Evanno G. Communal spawning of brook and river lampreys (Lampetra planeri and L. fluviatilis) is common in the Oir River (France). Ecology of Freshwater Fish 2010.
Lasne E., Sabatié M.R, Tremblay J., Beaulaton L., Roussel J.M (2010). A new sampling technique for larval lamprey population assessment in small river catchments. Fish. Res.(2010),doi:10.1016/j.fishres.2010.06.011
Marmonier P., Piscar C.t, Sarriquet P.M., Azam D.and Chauvet E. 2010 : Relevance of large litter bag burial for the study of leaf breakdown in the hyporheic zone. Hydrobiologia Volume 641, Number 1, 203-214, DOI: 10.1007
Nikolic, N., J. R. A. Butler, J. L. Bagliniere, R. Laughton, I. A. G. McMyn and C. Chevalet (2010). An examination of genetic diversity and effective population size in Atlantic salmon populations. Genetics Research 91(6): 395-412. http://dx.doi.org/10.1017/s0016672309990346
Papaïx J., Cubaynes, S., Buoro, M., Charmantier A., Perret P. and O. Gimenez(2010). Combining capture-recapture and pedigree data to estimate heritability of survival. Journal of Evolutionary Biology 23(10) : 2176-2184.
Régnier T, Bolliet V, Labonne J, Gaudin P, (2010). Assessing maternal effects on metabolic rate dynamics along early development in brown trout (Salmo trutta): an individual-based approach. J. Comp. Physiol. B, 180: 25–31. DOI 10.1007/s00360-009-0385-x
Tentelier C. & Piou C. (2010) Obstacles to migration constrain nest distribution of Atlantic salmon. Ecology of Freshwater Fish. DOI: 10.1111/j.1600-0633.2010.00452.x
Valiente A. G., Beall E., Garcia-Vazquez E., (2010). Population genetics of south European salmon under global change. Global Change Biology 16 (1), 36-47, doi: 10.1111/j.1365-2486.2009.01922.x

2009

Aymes JC, Rives J (2009) Detection efficiency of multiplexed Passive Integrated Transponder antennas is influenced by environmental conditions and fish swimming behaviour. Ecol. Freshw. Fish18: 507-513.
Bardonnet A.; Labonne J.; Lafitte J. & Garnier J. (2009). Relationships between individual behaviour and morphometry under different experimental conditions of temperature and feeding in European glass eels (Anguilla anguilla). Knowledge and Management of Aquatic Ecosystems 290-291: 02, 13 p.
Dauphin, G.; Prévost, E.; Adams, C.E. & Boylan, P. (2009). A Bayesian approach to estimating Atlantic salmon fry densities using a rapid sampling technique. Fisheries Management and Ecology
Forget G., Bernez I., (2009). Suivi de l'émergence des pousses de ligneux en vue d'une restauration passive des rives du ruisseau de la Vallée-Aux-Berges (Basse Normandie). Ingenieries, n° spécial en "Ecologie de la restauration", 31-39. http://dx.doi.org/10.1016/j.ecoenv.2008.08.001
Labonne, J.; Augery, M.; Parade, M.; Brinkert, S.; Prevost, P.; Héland, M. & Beall, E. (2009). Female preference for male body size in brown trout, Salmo trutta: is big still fashionable? Animal Behaviour 77, 129-137.
Nikolic N., Feve K., Chevalet C.,, Hoyheim B. et Riquet J. (2009). A set of 37 microsatellite DNA markers for genetic diversity and  structure analysis of Atlantic salmon Salmo salar populations. Journal of Fish Biology (2009) 74, 458–466  doi:10.1111/j.1095-8649.2008.02094.x
Rivot E., Porcher J-P., Riera P., Perrier C., Jouanin C., Baglinière J-L & Roussel J-M. (2009). Climate Change may have Affected Growth and Life History in Atlantic Salmon Juveniles over the Past 30 Years. American Fisheries Society Symposium 69, 855-857

2008

Acolas, M. L., J. M. Roussel and J. L. Bagliniere (2008). Linking migratory patterns and diet to reproductive traits in female brown trout (Salmo trutta L.) by means of stable isotope analysis on ova. Ecology of Freshwater Fish 17(3): 382-393. http://dx.doi.org/10.1111/j.1600-0633.2007.00290.x
Benyahya, B., St-Hilaire, A., Ouarda, T.B.M.J., Bobée, B. & Dumas, J. (2008). Comparison of non-parametric and parametric water temperature models on the Nivelle River, France. Hydrological Sciences 53 (3), 640-655
Bolliet, V. & Labonne, J. (2008). Individual patterns of rhythmic swimming activity in Anguilla anguilla glass eels synchronised to water current reversal. Journal of Experimental Marine Biology and Ecology 362 (2), 125-130.
Castillo, A.G.F., Ayllon, F., Moran, P., Izquierdo, J.I., Martinez, J.L., Beall, E. & Garcia-Vasquez, E. (2008). Interspecific hybridization and introgression are associated with stock transfers in salmonids. Aquaculture 278 (1-4), 31-36.
Lelong, A., Bolliet, V., Bancel, D. & Gaudin, P. (2008). Detection of elemental composition and caloric value variability at individual level in newly emerged brown trout Salmo trutta L. Journal of Fish Biology 72 (10), 2695-2699.
Rivot, E., E. Prevost, A. Cuzol, J. L. Bagliniere and E. Parent (2008). Hierarchical Bayesian modelling with habitat and time covariates for estimating riverine fish population size by successive removal method. Canadian Journal of Fisheries and Aquatic Sciences 65(1): 117-133. Juin Juillet 2008
Wilson M., Acolas M. L., Begout M. L., Madsen P. T. & Wahlberg M. (2008). Allis shad (Alosa alosa) exhibit an intensity-graded behavioral response when exposed to ultrasound. Journal of the Acoustical Society of America 124(4): EL243-EL247 http://dx.doi.org/10.1121/1.2960899

2007

Acolas, M. L., J. M. Roussel, J. M. Lebel and J. L. Bagliniere (2007). Laboratory experiment on survival, growth and tag retention following PIT injection into the body cavity of juvenile brown trout (Salmo trutta). Fisheries Research 86(2-3): 280-284. http://dx.doi.org/10.1016/j.fishres.2007.05.011
Bolliet, V.,; Lambert, P., Rives, J. & Bardonnet, A. (2007). Rhythmic swimming activity in Anguilla anguilla glass eels : synchronisation to water current reversal under laboratory conditions. Journal of Experimental Marine Biology and Ecology 344 (1), 54-66.
Castillo, A.G.F., Beall, E., Moran, P., Martinez, J.L., Ayllon, F. & Garcia-Vasquez, E. (2007). Introgression in the genus Salmo via allotriploids. Molecular Ecology 16 (8), 1741-1748.
Cucherousset, J., J. M. Paillisson and J. M. Roussel (2007). "Using PIT technology to study the fate of hatchery-reared YOY northern pike released into shallow vegetated areas." Fisheries Research 85(1-2): 159-164. http://dx.doi.org/10.1016/j.fishres.2007.01.011
Dumas, J., Bassenave, J.G., Jarry, M., Barriere, L. & Glise, S. (2007). Effects of fish farm effluents on egg-to-fry development and survival of brown trout in artificial redds. Journal of Fish Biology 70 (6), 1734-1758.
Dumas, J., Olaizola, M. & Barriere, L. (2007). Survie embryonnaire du saumon atlantique (Salmo salar L.) dans un cours d’eau du sud de son aire de répartition, la Nivelle. Bulletin Français de la Pêche et de la Pisciculture 384 (1), 39-60.
Lefrancois, J., C. Grimaldi, C. Gascuel-Odoux and N. Gilliet (2007). Suspended sediment and discharge relationships to identify bank degradation as a main sediment source on small agricultural catchments. Hydrological Processes 21(21): 2923-2933. http://dx.doi.org/doi:10.1002/hyp.6509
Robinet T, Acou A., Boury P. & Feunten E. (2007). Concepts for characterizing spawning biomass of the European eel (Anguilla Anguilla) in different catchments. Vie et Milieu – Life and Environment 57, 201-211.

2006

Bardonnet A., Poncin P., Roussel J-M. (2006). Brown trout fry move inshore at night: a choice for water depth or velocity? Ecology of Freshwater Fish 15: 309-314. http://dx.doi.org/10.1111/j.1600-0633.2006.00160.x
Charles K, Roussel J-M., Lebel J-M., Baglinière J-L., Ombredane D. (2006). Genetic differentiation between anadromous and freshwater resident brown trout (Salmo trutta L.): insights obtained from stable isotope analysis. Ecology of Freshwater Fish 15: 255-263. http://dx.doi.org/10.1111/j.1600-0633.2006.00149.x
Cucherousset J., Ombredane D., Baglinière J-L. (2006). Linking juvenile growth and migration behaviour of brown trout (Salmo trutta) using individual PIT-tagging. Cahiers de Biologie Marine 47 : 73-78.
Daniel H., Bernez I., Haury J. (2006). Relationships between macrophytic vegetation and physical features of river habitats: the need for a morphological approach. Hydrobiologia 270: 11-17. http://dx.doi.org/10.1007/s10750-006-0156-6
Haury J., Peltre M.-C., Trémolières M., Barbe J., Thiébaut G., Bernez I., Daniel H., Chatenet P., Haan-Archipof G., Muller S., Dutartre A., Laplace-Treyture C., Cazaubon A., Lambert-Servien E. (2006). A new method to assess water trophy and organic pollution - the Macrophyte Biological Index for Rivers (IBMR): its application to different types of river and pollution. Hydrobiologia 270: 153-158. http://dx.doi.org/10.1007/s10750-006-0175-3
J. Dumas, S. Marty (2006). A new method to evaluate egg-to-fry survival in salmonids, trials with Atlantic salmon. Journal of Fish Biology. Volume 68, Issue 1, Page 284-304, Jan 2006. http://dx.doi.org/10.1111/j.0022-1112.2006.00907.x
Linnansaari T., Roussel J-M., Cunjak R.A., Halleraker J.H.(2006). Efficacy and accuracy of portable PIT-antennae when tracking juvenile Atlantic salmon (Salmo salar L.) in ice covered streams. Hydrobiologia 2007, 582 (1) : 281-287. http://dx.doi.org/10.1007/s10750-006-0546-9
Rifflart R., Marchand F., Rivot E., Baglinière J.L. (2006). Scale reading validation for estimating age from tagged fish recapture in a brown trout (Salmo trutta) population. Fisheries Research 78: 380-384. http://dx.doi.org/10.1016/j.fishres.2005.11.018
Rivot E., Prévost E., Porcher J.P., Baglinière J.L. (2006). A dynamic metapopulation model for the Atlantic salmon (Salmo salar). Consequences for management. Cahiers de Biologie Marine 47: 113-114.

2005

Baglinière, J-L., Marchand, F., Vauclin, V. (2005). Interannual changes in recruitment of the Atlantic salmon (Salmo salar) population in the River Oir (Lower Normandy, France): relationships with spawners and instream habitat. ICES Journal of Marine Science, 62, 695-707. http://dx.doi.org/10.1016/j.icesjms.2005.02.008
Charles K., R. Guyomard, B. Hoyheim, D. Ombredane, J-L. Baglinière (2005). Lack of genetic differenciation between anadromous and non-anadromous sympatric trout in a Normandy population. Aquatic Living Ressources 18: 65-69. http://dx.doi.org/10.1051/alr:2005006
Cucherousset J., J-M. Roussel, R. Keeler, R.A. Cunjak, R. Stump (2005). The use of two new portable 12-mm PIT-tag detectors to track small fish in shallow streams. North American Journal of Fisheries Management 25: 270-274. http://dx.doi.org/10.1577/M04-053.1
Cucherousset J., Ombredane D., Katia Charles, Marchand F., Baglinière J-L. (2005). A continuum of life history tactics in a brown trout (Salmo trutta) population. Canadian Journal of Fisheries and Aquatic Sciences 62: 1600-1610. http://dx.doi.org/10.1139/F05-057
Daniel H, Bernez I, Haury J, Le Coeur D (2005). The ability of aquatic macrophytes to indicate fish farm pollution in two salmon rivers. Hydrobiologia 551:183-192
Vilizzi L., Copp G.H., Roussel J-M. (2005). Assessing temporal variation and autocorrelation in fish habitat use. Folia Zoologica 54: 432-442. http://dx.doi.org/10.1007/s10750-005-4460-3

2004

Bernez I, Daniel H, Haury J, Ferreira MT (2004). Combined effects of environmental factors and regulation on macrophyte vegetation along three rivers in Western France. River Research and Applications 20:43-59. http://dx.doi.org/10.1002/rra.718
Charles K, J-M. Roussel, R.A. Cunjak (2004). Estimating the contribution of sympatric anadromous and freshwater-resident brown trout to juvenile production. Marine and Freshwater Research 55: 185-191. http://dx.doi.org/10.1071/MF03173
Ó Maoiléidigh N., McGinnity, P., Prévost E., Potter E.C.E., Gargan P., Crozier W., Mills P., Roche W. (2004). Application of pre-fishery abundance modelling and Bayesian hierarchical stock and recruitment analysis. Setting to the provision of precautionary catch advice for Irish salmon Salmo salar L. fisheries. ICES Journal of Marine Science 61: 1370-1378.
Rivot, E., Prévost, E., Parent, E., Baglinière, J.L. (2004). A Bayesian state-space modelling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data. Ecological Modelling, 179: 463-485.
Vilizzi L., G.H. Copp, J-M. Roussel (2004). Assessing variation in suitability curves and electivity profiles in temporal studies of fish habitat use. River Research and Applications 20: 605-618. http://dx.doi.org/10.1002/rra.767