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International Grape Genome Program

Fonctional Genomics

The members of the consortium develop resources to facilitate the understanding of gene function and gene regulation.

Compendium of gene expression

See for instance: Moretto M, Sonego P, Pilati S, Malacarne G, Costantini L, Grzeskowiak L, Bagagli G, Grando MS, Moser C, Engelen K (2016) VESPUCCI: Exploring Patterns of Gene Expression in Grapevine. Front Plant Sci, 10;7:633.

Metabolic pathways

VitisCyc database is a collection of grapevine metabolic pathways, reactions, enzymes and proteins, genes, metabolites and small molecules.

This online, open source knowledgebase, developed collaboratively by Naithani and Jaiswal laboratories at Oregon State University supports:

  • search and browse functions for its various components
  • gene expression and pathway enrichment analyses
  • cross species comparison of metabolic pathways

VitisCyc is currently supported by Oregon State University Funds provided to Dr. Naithani. We are constantly seeking community-based curation / feedback and/or data submission. For more information, contact Dr. Sushma Naithani.