Know more

Our use of cookies

Cookies are a set of data stored on a user’s device when the user browses a web site. The data is in a file containing an ID number, the name of the server which deposited it and, in some cases, an expiry date. We use cookies to record information about your visit, language of preference, and other parameters on the site in order to optimise your next visit and make the site even more useful to you.

To improve your experience, we use cookies to store certain browsing information and provide secure navigation, and to collect statistics with a view to improve the site’s features. For a complete list of the cookies we use, download “Ghostery”, a free plug-in for browsers which can detect, and, in some cases, block cookies.

Ghostery is available here for free: https://www.ghostery.com/fr/products/

You can also visit the CNIL web site for instructions on how to configure your browser to manage cookie storage on your device.

In the case of third-party advertising cookies, you can also visit the following site: http://www.youronlinechoices.com/fr/controler-ses-cookies/, offered by digital advertising professionals within the European Digital Advertising Alliance (EDAA). From the site, you can deny or accept the cookies used by advertising professionals who are members.

It is also possible to block certain third-party cookies directly via publishers:

Cookie type

Means of blocking

Analytical and performance cookies

Realytics
Google Analytics
Spoteffects
Optimizely

Targeted advertising cookies

DoubleClick
Mediarithmics

The following types of cookies may be used on our websites:

Mandatory cookies

Functional cookies

Social media and advertising cookies

These cookies are needed to ensure the proper functioning of the site and cannot be disabled. They help ensure a secure connection and the basic availability of our website.

These cookies allow us to analyse site use in order to measure and optimise performance. They allow us to store your sign-in information and display the different components of our website in a more coherent way.

These cookies are used by advertising agencies such as Google and by social media sites such as LinkedIn and Facebook. Among other things, they allow pages to be shared on social media, the posting of comments, and the publication (on our site or elsewhere) of ads that reflect your centres of interest.

Our EZPublish content management system (CMS) uses CAS and PHP session cookies and the New Relic cookie for monitoring purposes (IP, response times).

These cookies are deleted at the end of the browsing session (when you log off or close your browser window)

Our EZPublish content management system (CMS) uses the XiTi cookie to measure traffic. Our service provider is AT Internet. This company stores data (IPs, date and time of access, length of the visit and pages viewed) for six months.

Our EZPublish content management system (CMS) does not use this type of cookie.

For more information about the cookies we use, contact INRA’s Data Protection Officer by email at cil-dpo@inra.fr or by post at:

INRA
24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal

Home page

Présentations orales / Oral presentations

Un fichier pdf pour chaque présentation orale pour laquelle nous avons obtenu l'autorisation des auteurs est mis en ligne et peut être téléchargé.

A PDF file with the oral presentation for which the authors give their agreement for publication is available on-line and can be downloded.

Lundi 6 Juillet / July, Monday 6th

Sessions Plénières I - Amphithéâtre / Plenary Sessions I - Amphitheater

Biochimie, Biologie Structurale & Bioinformatique Structurale - Biochemistry, Structural Biology & Structural Bioinformatics

14h30 - 15h10KeynoteChristine ORENGO  - A Structural Perspective on the Evolution of Protein Functions. PDF & MP3

15h10 - 15h30 Yasaman Karami - Accelerating Protein Structure Prediction using Particle Swarm  Optimization on GPU. PDF & MP3

JOBIM2015 Awards

JOBIM2015 Awards

15h30 - 15h50 Isaure Chauvotde Beauchene - Modelling ssRNA-protein complexes at atomic resolution. PDF & MP3

15h50 - 16h10 Seyed Ziaeddin Alborzi - EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains. PDF & MP3

16h10 - 16h30 Marco Pasi - Sequence determines the structure and microsecond-scale dynamics of B-DNA and its bound cations. PDF & MP3

Sessions Plénières II - Amphithéâtre / Plenary Sessions II - Amphitheater

Évolution, Phylogénie & Paléogénomique - Evolution, Phylogeny & Paleogenomics

17h00 - 17h40KeynoteZiheng YANG - Estimation of species divergence times incorporating fossil and molecular information. PDF & MP3

17h40 - 18h00 Elodie Cassan - Evolutionary analyses support that ASP (Anti Sense Protein) overlapping ORF is the 10th gene of HIV-1 M pandemic group. PDF & MP3

18h00 - 18h20 Blerina Sinaimeri - Cophylogeny Reconstruction via an Approximate Bayesian Computation. PDF & MP3

18h20 - 18h40 Gabriel Markov - The same or not the same: Lineage-specific gene expansions and homology relationships in multigene families in nematodes. PDF & MP3

18h40 - 18h50 Christoph GRUNAU - Réseaux thématiques pluridisciplinaires 3E «Epigénétique en Ecologie et Evolution ». PDF & MP3

18h50 - 19h00 Dominique JOLY - Groupement De Recherche en Génomique Environnementale (GDR GE). PDF & MP3

19h00 - 19h10 Julien FUMEY - JeBiF   PDF & MP3

18h10 - 19h20 Yoann MOUSCAZ - bioinfo-fr.net   PDF & MP3

Mardi 7 Juillet 2015 / July, Tuesday 7th

Sessions Plénières - Amphithéâtre / Plenary Sessions - Amphitheater 

09h00 - 09h40Keynote Stéphane ROMBAUTS - The next challenge: sequencing, assembling and annotation of complex genomes with NGS. PDF & MP3

09h40 - 10h00 Jérémy Tournayre - Fat&MuscleDB: A database to understand tissue growth processes contributing to body or muscle composition. PDF & MP3

10h00 - 10h20 Alexandre Cormier - Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga Ectocarpus. PDF & MP3

10h20 - 10h40 Frédéric Choulet - A Reference Sequence of the Bread Wheat Chromosome 3B. PDF & MP3

11h10 - 11h50KeynoteThomas WALTER - Bioimage Informatics for Phenomics MP3

11h50 - 12h30Keynote Daniel SEGRE - Spatio-temporal models of metabolism in microbial communities. PDF & MP3

12h30 - 13h00 Jean-François GIBRAT - IFB-corePDF & MP3

Sessions Parallèles / Parallel Sessions

14h30 - 14h50

  • Espace Restauration Niveau 2 – Demo A1
    • Jacques van Helden - Regulatory Sequence Analysis Tools (RSAT)
  • Amphithéâtre – Demo B1
    • Lucas Auer - FROGS: Find Rapidly OTU with Galaxy Solution
  • Salles Commission 11-12-13 - Niveau 2 – Demo C1
    • Nicolas Kaspric - Proteome data mining using ProteINSIDE online tool

14h50 - 15h10

  • Espace Restauration Niveau 2 – Demo A2
    • Laurent Bulteau - DINGHY: Dynamic Interactive Navigator for General Hypergraphs in Biology
  • Amphithéâtre – Demo B2
    • Bryan Brancotte - Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio. PDF
  • Salles Commission 11-12-13 - Niveau 2 – Demo C2
    • Isabelle Guigon - Finding and analysing microRNAs in plant genomes with miRkwood. PDF

Sessions Plénières - Amphithéâtre / Plenary Sessions - Amphitheater

16h40 - 17h20KeynoteAntony COX - The power of populations: methods that scale to thousands of human genomes. PDF & MP3

17h20 - 17h40 Aymeric Antoine-Lorquin - Comparison of the targets obtained by a scoring matrix and by a regular expression. Application to the search for LXR binding sites. PDF & MP3

17h40 - 18h00 Mathilde Le Boudic-Jamin - De novo detection of structure repeats in Proteins. PDF & MP3

18h00 - 18h20 Morgane Thomas-Cholier - ExoProfiler: a motif-based approach to analyse ChIP-exo signal. PDF & MP3

18h20 - 18h40 Nicolas Terrapon - How does the human gut microbiota breakdown complex polysaccharides? PDF & MP3

18h40 - 18h55 Valérie POLONAIS - IUT Aurillac. PDF & MP3

18h55 - 19h10 Gisèle BRONNER - Master Bioinformatique Université Blaise Pascal. PDF & MP3

Mercredi 8 Juillet 2015 / July, Wednesday 8th

Sessions Plénières - Amphithéâtre / Plenary Sessions - Amphitheater

08h10 - 08h50KeynoteRob FINN - Towards understanding the functional and taxonomic repertoire of a metagenome. PDF & MP3

08h50 - 09h10 Guy Perrière - RecStat: a set of R utilities for coding DNA sequences prediction in metagenomes. PDF & MP3

09h10 - 09h30 Faouzi Jaziri - Propositional Logic for Efficient Microbial Community Assessment by DNA Microarray Data Analysis. PDF & MP3

09h30 - 10h10KeynoteAna CONESA - Lessons and results of integrative multi-omics data analysis. MP3

10h10 - 10h30 Jacques Colinge - Computational Analysis of Promiscuous Drug Protein Target Spectra. PDF & MP3

11h00 - 11h40KeynoteLaurence MOREAU - New prospects and challenges raised by the implementation of Genome-wide association mapping and Genomic Selection in plants. Illustrations in maize. PDF & MP3

Sessions Parallèles / Parallel Sessions

11h40 - 12h00

  • Salles Commission 11-12-13 - Niveau 2 – Demo D1
    • Magali Berland - Demo of metagenomic data analysis: from reads to biomarkers with METEOR and MetaOMineR
  • Espace Restauration Niveau 2 – Demo E1
    • Marie-Laure Franchinard - View and synchronize several genotypes using IGV
  • Amphithéâtre – Demo F1
    • Laurent Jourdren - Eoulsan 2: Facilitating expansion to new NGS tools and execution platforms

12h00 - 12h20

  • Salles Commission 11-12-13 - Niveau 2 – Demo D2
    • Bérénice Batut - ASAIM: an intuitive and adjustable pipeline to process metatranscriptomic data from intestinal microbiota. PDF
  • Espace Restauration Niveau 2 – Demo E2
    • Lydia Ait Braham - BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies
  • Amphithéâtre – Demo F2
    • Stéphane Télétchéa - DockNmine, a web portal to compare virtual and experimental interaction data

12h20 - 12h40

  • Salles Commission 11-12-13 - Niveau 2 – Demo D3
    • Alexandra Louis - Genomicus: fast and intuitive comparative genomics in eukaryotes
  • Espace Restauration Niveau 2 – Demo E3
    • Benoit Bely - How UniProtKB/TrEMBL Tackles High Redundant Proteomes. PDF
  • Amphithéâtre – Demo F3
    • Delphine Steinbach - GnpIS-Asso : a new generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping data. PDFMOV

14h30 - 15h30 Sophie Schbath - Assemblée Générale de la Société Française de Bioiformatique - SFBI. PDF

Sessions Plénières - Amphithéâtre / Plenary Sessions - Amphitheater

16h00 - 16h40KeynoteChristoph GRUNAU - Environmental and evolutionary epigenomics of non-model organisms:  challenges and solutions. PDF & MP3

16h40 - 17h00 Daniel Jost - Interactions between chromatin states shape the epigenome nuclear organization. PDF & MP3

17h00 - 17h30 Nathalie RIVIERES - Biogemma / Limagrain. PDF & MP3

Jeudi 9 Juillet 2015 / July, Thursday 9th

09h00 - 09h40KeynoteKatharina HUBER - Dealing with big evolutionary data. PDF & MP3

09h40 - 10h10 Imene Boudellioua - Association Rule Mining for Metabolic Pathway Prediction.

10h10 - 10h30 Nicolas Daccord - TopoIBase: a comprehensive database dedicated to type IA DNA-topoisomerases. PDF & MP3

11h00 - 11h20 Vincent Henry - OMICtools: A workflow for multi-omic data analysis. PDF & MP3

11h20 - 11h40 Mélanie Pétéra - Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. PDF & MP3

SFBI Awards - Sophie SCHBATH & Marie-France SAGOT

JOBIM2015 Awards

JOBIM2015 Awards

MP3

Annonce JOBIM2016 - F. Picard. PDF & MP3

Clôture / Closure JOBIM2015 Clermont-Ferrand - Pierre PEYRET

JOBIM 2015 Clermont-Ferrand

MP3