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Publications de Jean-Jacques Daudin

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ACL

Articles dans des revues internationales ou nationales avec comité de lecture répertoriées dans les bases de données

[2016, article | www]Ferhi, S., Deschamps, M., Daudin, J.-J., Houot, S., Nelieu, S., "Factors influencing the extraction of pharmaceuticals from sewage sludge and soil: an experimental design approach". Analytical and Bioanalytical Chemistry, 408 (22), 6153-6168. DOI : 10.1007/s00216-016-9725-3

[2015, article | www]J. Leger, J. Daudin, and C. Vacher, "Clustering methods differ in their ability to detect patterns in ecological networks," Methods in Ecology and Evolution, 2015.

[2014, article | www]M. Bourdat-Deschamps, S. Leang, N. Bernet, J.-J. Daudin, and S. Nélieu, "Multi-residue analysis of pharmaceuticals in aqueous environmental samples by online solid-phase extraction–ultra-high-performance liquid chromatography-tandem mass spectrometry: Optimisation and matrix effects reduction by quick, easy, cheap, effective, rugged and safe extraction," Journal of Chromatography A, vol. 1349, pp. 11-23, 2014.

[2013, article | www]L. Lagache, J. B. Leger, J. J. Daudin, R. Petit, and C. Vacher, "Putting the Biological Species Concept to the Test: Using Mating Networks to Delimit Species," PLOS ONE, 2013.

[2013, article | www]J. B. Leger, C. Vacher, and J. J. Daudin, "Detection of structurally homogeneous subsets in graphs," Stat. Comput., 2013.

[2013, article | www]F. Tenehaus-Azziza, M. Alesque, J. J. Daudin, and M. Sanaa, "Risk-Based approach for microbial food safety management in dairy industry. The case of Listeria Monocytogenes in soft cheese made from pasteurized milk," Risk Analysis, 2013.

[2013, article]F. Wurmser, T. Mary-Huard, J. Daudin, D. Joly, and C. Montchamp-Moreau, "Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of Drosophila simulans," PloS one, vol. 8, iss. 11, p. 79750, 2013.

[2012, article]A. Celisse, J.-J. Daudin, and L. Pierre, "Consistency of maximum-likelihood and variational estimators in the Stochastic Block Model," Electron. J. Statis., vol. 6, pp. 1847-99, 2012.

[2012, article | www]A. Celisse, J.-J. Daudin, and L. Pierre, "Consistency of maximum-likelihood and variational estimators in the stochastic block model," Electronic Journal of Statistics, vol. 6, pp. 1847-1899, 2012.

[2012, article | www]A. Channarond, J. J. Daudin, and S. Robin, "Classification and estimation in the Stochastic Blockmodel based on the empirical degrees," Electron. J. Statist., vol. 6, pp. 2574-2601, 2012.

[2012, article | www]A. Lesdéma, G. Fromentin, J.-J. Daudin, A. Arlotti, S. Vinoy, Tome, and A. Marsset-Baglieri, "Characterization of the Three-Factor Eating Questionnaire scores of a young French cohort," Appetite, 2012.

[2012, article | www]S. Li-Thiao-Té, J.-J. Daudin, and S. Robin, "Bayesian model averaging for estimating the number of classes. Applications to the total number of species in metagenomics," J. Applied Statis., 2012.

[2012, article | www]S. Gazal, J.-J. Daudin, and S. Robin, "Accuracy of variational estimates for random graph mixture models," Journal of Statistical Computation and Simulation, vol. 82, iss. 6, pp. 849-862, 2012.

[2011, article | www]J.-J. Daudin, "A review of statistical models for clustering networks with an application to a PPI network," Journal de la Société Française de Statistique, vol. 152, iss. 2, pp. 111-125, 2011.

[2010, article | www]J. J. Daudin, L. Pierre, and C. Vacher, "Model for Heterogeneous Random Networks Using Continuous Latent Variables and an Application to a Tree–Fungus Network," Biometrics, vol. 66, pp. 1043-1051, 2010.

[2010, article | www]C. Vacher, J. J. Daudin, D. Piou, and M. L. Desprez-Loustau, "Ecological integration of alien species into a tree-parasitic fungus network," Biological Invasions, vol. 12, iss. 9, pp. 3249-3259, 2010.

[2009, article | www]F. Picard, V. Miele, J.-J. Daudin, L. Cottret, and S. Robin, "Deciphering the connectivity structure of biological networks using MixNet," BMC Bioinformatics, vol. Suppl 6, p. 17, 2009.

[2008, article | www]F. Picard, J.-J. Daudin, M. Koskas, S. Schbath, and S. Robin, "Assessing the exceptionality of network motifs," JCB, vol. 15, iss. 1, pp. 1-20, 2008.

[2008, article | www]D. Sauvant, P. Schmidely, J.-J. Daudin, and N. St-Pierre, "Meta-analyses of experimental data in animal nutrition," ANIMAL, vol. 8, iss. 2, pp. 1203-1214, 2008.

[2008, article | www]M.-L. Martin-Magniette, J. Aubert, A. Bar-Hen, S. Elftieh, F. Magniette, J.-P. Renou, and J.-J. Daudin, "Normalization for triple-target microarray experiments," BMC BIOINFORMATICS, vol. 9, iss. 216, 2008.

[2008, article | www]J.-J. Daudin, F. Picard, and S. Robin, "A mixture model for random graphs," Stat. Comput., vol. 18, iss. 2, pp. 173-83, 2008.

[2008, article | www]J.-J. Daudin and T. Mary-Huard, "Estimation of the conditional risk in classification: The swapping method," "Comp. Stat. and Data Anal.", vol. 52, p. 3220–-3232, 2008.

[2008, article | www]T. Mary-Huard, J. Aubert, N. Mansouri-Attia, O. Sandra, and J.-J. Daudin, "Statistical methodology for the analysis of dye-switch microarray experiments," BMC Bioinformatics, vol. 9, iss. 98, 2008.

[2007, article | www]T. Mary-Huard, J.-J. Daudin, M. Baccini, A. Biggeri, and A. Bar-Hen, "Biases induced by pooling samples in microarray experiments," Bioinformatics, vol. 23, iss. 13, 2007.

[2007, article]T. Mary-Huard, S. Robin, and J.-J. Daudin, "A penalized criterion for variable selection in classification," J. Mult. Anal., vol. 98, iss. 4, pp. 695-705, 2007.

[2007, article | www]M. Bourdat-Deschamps, J.-J. Daudin, and E. Barriuso, "An experimental design approach to optimise the determination of polycyclic aromatic hydrocarbons from rainfall water using stir bar sorptive extraction and high performance liquid chromatography-fluorescence detection," JOURNAL OF CHROMATOGRAPHY A, vol. 1167, iss. 2, pp. 143-153, 2007.

[2007, article | www]S. Robin, A. Bar-Hen, J.-J. Daudin, and L. Pierre, "A semi-parametric approach for mixture models: Application to local False Discovery Rate estimation," CSDA, vol. 51, iss. 12, pp. 5483-93, 2007.

[2007, article | www]F. Picard, S. Robin, E. Lebarbier, and J.-J. Daudin, "A Segmentation/Clustering Model for the Analysis of Array CGH Data," Biometrics, vol. 63, iss. 3, pp. 758-66, 2007.

[2006, article | www]C. Matias, S. Schbath, E. Birmelé, J. J. Daudin, and S. Robin, "Network motifs : mean and variance for the count," REVSTAT, vol. 4, iss. 1, pp. 31-51, 2006.

[2006, article | www]F. Aziza, E. Mettler, J.-J. Daudin, and M. Sanaa, "Stochastic, compartmental, and dynamic modeling of cross-contamination during mechanical smearing of cheeses," RISK ANALYSIS, vol. 26, iss. 3, pp. 731-745, 2006.

[2006, article | www]P. Rouillier, S. Bertrais, J.-J. Daudin, J.-N. Bacro, S. Hercberg, and M.-C. Boutron-Ruault, "Drinking patterns are associated with variations in atherosclerotic risk factors in French men," EUROPEAN JOURNAL OF NUTRITION, vol. 45, iss. 2, pp. 79-87, 2006.

[2005, article | www]M.-L. Martin-Magniette, J. Aubert, E. Cabannes, and J.-J. Daudin, "Answer to the comments of K. Dobbin, J. Shih and R. Simon on the paper `Evaluation of the gene-specific dye-bias in cDNA microarray experiments'," Bioinformatics, vol. 21, iss. 14, pp. 3065-3065, 2005.

[2005, article | www]F. Picard, S. Robin, M. Lavielle, C. Vaisse, and J.-J. Daudin, "A statistical approach for array CGH data analysis," BMCB, vol. 6, iss. 27, p. 1, 2005.

[2005, article | www]P. Delmar, S. Robin, D. Le Roux, and J.-J. Daudin, "Mixture model on the variance for the differential analysis of gene expression," JRSSC, vol. 54, iss. 1, pp. 31-50, 2005.

[2005, article]T. Lorino, J.-J. Daudin, S. Robin, and M. Sanaa, "Factors associated with time to neonatal diarrhoea in French beef calves," Prevent. Veterin. Med., vol. 68, iss. 2-4, pp. 91-102, 2005.

[2005, article | www]P. Delmar, S. Robin, and J.-J. Daudin, "VarMixt : Efficient variance modelling for the differential analysis of replicated gene expression data," Bioinformatics, vol. 21, iss. 4, pp. 502-8, 2005.

[2005, article | www]M.-L. Martin-Magniette, J. Aubert, E. Cabannes, and J.-J. Daudin, "Evaluation of the gene-specific dye bias in cDNA microarray experiments," Bioinformatics, vol. 21, iss. 9, pp. 1995-2000, 2005.

[2005, article | www]D. Sauvant, P. Schmidely, and J.-J. Daudin, "Meta-analysis of experimental data : application in animal nutrition," PRODUCTIONS ANIMALES, vol. 18, iss. 1, pp. 63-73, 2005.

[2005, article | www]P. Rouillier, M.-C. Boutron-Ruault, S. Bertrais, and J.-J. Daudin, "Alcohol and atherosclerotic vascular disease risk factors in French men: Relationships are linear, J-shaped, and U-shaped," ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH, vol. 29, iss. 1, pp. 84-88, 2005.

[2004, article | www]J. Aubert, A. Bar-Hen, J.-J. Daudin, and S. Robin, "Determination of the differentially expressed genes in microarray experiments using local FDR," BMC BIOINFORMATICS, vol. 5, iss. 125, 2004.

[2004, article]T. Lorino, M. Sanaa, S. Robin, and J.-J. Daudin, "Comparison of semiparametric regression models for correlated survival data," CSS, vol. 33, iss. 8, pp. 1944-1975, 2004.

[2004, article | www]T. Mary-Huard, S. Robin, J. J. Daudin, F. Bitton, E. Cabannes, and P. Hilson, "Spotting effect in microarray experiments," BMCB, vol. 5, iss. 63, pp. 1-9, 2004.

[2004, article | www]A. Bar-Hen and J. J. Daudin, "A simple goodness-of-fit test for parametric regression models," COMMUNICATIONS IN STATISTICS-THEORY AND METHODS, vol. 33, iss. 6, pp. 1357-1370, 2004.

[2004, article]P. Rouillier, M.-C. Boutron-Ruault, S. Bertrais, and J. J. Daudin, "Drinking patterns in French adult men A cluster analysis of alcoholic beverages and relationship with lifestyle," EUROPEAN JOURNAL OF NUTRITION, vol. 43, iss. 2, pp. 69-76, 2004.

[2003, article]J. J. Daudin, M. P. Etienne, and P. Vallois, "Asymptotic behavior of the local score of independent and identically distributed random sequences," Stochastic Processes and their Applications, vol. 107, iss. 1, 2003.

[2003, article | www]M.-E. Lafargue, M. Feinberg, J. J. Daudin, and D. Rutledge, "Detection of heterogeneous wheat samples using near infrared spectroscopy," JOURNAL OF NEAR INFRARED SPECTROSCOPY, vol. 11, iss. 2, pp. 109-121, 2003.

[2003, article | www]M.-E. Lafargue, M. Feinberg, J. J. Daudin, and D. Rutledge, "Homogeneity check of agricultural and food industries samples using near infrared spectroscopy," ANALYTICAL AND BIOANALYTICAL CHEMISTRY, vol. 375, iss. 4, pp. 496-504, 2003.

[2002, article]J.-N. Bacro, J.-J. Daudin, S. Mercier, and S. Robin, "Back to the local score in the logarithmic case: a direct and simple proof," AISM, vol. 54, pp. 748-757, 2002.

[2002, article | www]S. Robin, J.-J. Daudin, H. Richard, M.-F. Sagot, and S. Schbath, "Occurrence probability of structured motifs in random sequences," Journal of Computational Biology, vol. 9, pp. 761-773, 2002.

[2001, article | www]S. Robin and J.-J. Daudin, "Exact distribution of the distances between any occurrences of a set of words," Annals of the Institute of Statistical Mathematics, vol. 53, iss. 4, pp. 895-905, 2001.

[2001, article | www]S. Mercier and J.-J. Daudin, "Exact distribution for the local score of one i.i.d. random sequence," JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 8, iss. 4, pp. 373-380, 2001.

[2001, article | www]S. Mercier, D. Cellier, F. Charlot, and J.-J. Daudin, "Exact and Asymptotic distribution of the local score of one i.i.d. random sequence," Lecture Notes in Computer Science, vol. 2066, pp. 74-83, 2001.

[2001, article | www]A. Sekowska, S. Robin, J.-J. Daudin, A. Hénaut, and A. Danchin, "Extracting biological information from DNA arrays : an unexpected link between arginine and methionine metabolism in Bacillus subtilis," Genome Biology, vol. 2, iss. 6, 2001.

[1999, article | www]S. Robin and J. Daudin, "Exact Distribution of word occurrences in a random sequence of letters," J. Appl. Prob., vol. 36, pp. 179-193, 1999.

[1999, article]J. Daudin and A. Bar-Hen, "Selection in discriminant analysis with continuous and discrete variables," COMPUTATIONAL STATISTICS & DATA ANALYSIS, vol. 32, pp. 161-175, 1999.

[1999, article]J. Daudin and S. Mercier, "Exact distribution for the local score of independent and identically distributed random sequence," COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE I-MATHEMATIQUE, vol. 329, pp. 815-821, 1999.

[1998, article]A. Bar-Hen and J.-J. Daudin, "Asymptotic distribution of Matusita's distance: Application to the location model," Biometrika, vol. 85, iss. 2, pp. 477-481, 1998.

[1997, article]A. Bar-Hen and J.-J. Daudin, "A test of a special case of typicality in linear discriminant analysis," BIOMETRICS, vol. 53, iss. 1, pp. 39-48, 1997.

[1996, article | www]J.-J. Daudin, "Study on amplitude of a Bernoulli random walk," RAIRO-RECHERCHE OPERATIONNELLE-OPERATIONS RESEARCH, vol. 30, iss. 1, pp. 99-106, 1996.

[1995, article | www]J.-J. Daudin, "GENERALIZATION OF THE MAHALANOBIS DISTANCE IN THE MIXED CASE," JOURNAL OF MULTIVARIATE ANALYSIS, vol. 53, iss. 2, pp. 332-342, 1995.

[1994, article | www]L. Orsini, J.-J. Daudin, and A. P. Bermond, "COPPER BIOAVAILABILITY IN CALCAREOUS SOIL SAMPLES. RELATION TO THE CHEMICAL FRACTIONATION OF COPPER," ENVIRONMENTAL TECHNOLOGY, vol. 11, pp. 1061-1068, 1994.

[1992, article | www]J.-J. Daudin, "DOUBLE SAMPLING (X)BAR CHARTS," JOURNAL OF QUALITY TECHNOLOGY, vol. 24, iss. 2, pp. 78-87, 1992.

[1991, article | www]V. LAVERGNE, M. LEFORTBUSON, J.-J. DAUDIN, A. CHARCOSSET, J.-P. SAMPOUX, and A. GALLAIS, "GENETIC-VARIABILITY AMONG POPULATIONS OF MAIZE GERMPLASM .1. COMPARATIVE-ANALYSIS OF TOP CROSS VALUES AND PER SE VALUES OF POPULATIONS," MAYDICA, vol. 36, iss. 3, pp. 227-236, 1991.

[1991, article | www]V. LAVERGNE, M. LEFORTBUSON, J.-J. DAUDIN, A. CHARCOSSET, J.-P. SAMPOUX, and A. GALLAIS, "GENETIC-VARIABILITY AMONG POPULATIONS OF MAIZE GERMPLASM .2. ENZYMATIC POLYMORPHISM AND ITS RELATIONSHIP TO QUANTITATIVE TRAIT DIVERSITY," MAYDICA, vol. 36, iss. 3, pp. 237-246, 1991.

[1989, article | www]J.-J. DAUDIN, "CORRESPONDENCE-ANALYSIS OF LONGITUDINAL CATEGORICAL-DATA VANDERHEIJDEN,PGM," PSYCHOMETRIKA, vol. 54, iss. 1, pp. 165-166, 1989.

[1989, article | www]J.-J. Daudin, C. Duby, and P. Trécourt, "PCA studied by the bootstrap and the infinitesimal jackknife method," Statistics, vol. 20, iss. 2, pp. 265-270, 1989.

[1988, article | www]J.-J. Daudin, C. Duby, and P. Trécourt, "Stability of principal component analysis studied by the bootstrap method," Statistics, vol. 19, pp. 241-258, 1988.

[1986, article | www]J.-J. DAUDIN, "SELECTION OF VARIABLES IN MIXED-VARIABLE DISCRIMINANT-ANALYSIS," BIOMETRICS, vol. 42, iss. 3, pp. 473-481, 1986.

[1985, article | www]E. AGOSIN, J.-J. DAUDIN, and E. ODIER, "SCREENING OF WHITE-ROT FUNGI ON (C-14)LIGNIN-LABELLED AND (C-14)WHOLE-LABELLED WHEAT STRAW," APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, vol. 22, iss. 2, pp. 132-138, 1985.

[1985, article | www]G. BARBAISE, S. CORRE, and J.-J. DAUDIN, "MARKETING DECISION AND SELECTION ON INDEXING," REVUE FRANCAISE DU MARKETING, vol. 99B, iss. 4, pp. 94-110, 1985.

[1984, article | www]C. TOURNEUR and J.-J. DAUDIN, "SELECTION OF MICROCOCCACEAE FOR THEIR UTILIZATION IN CHEESE-MAKING," LATTE, vol. 9, iss. 10, pp. 790-794, 1984.

[1983, article | www]J.-L. SCHMIDT and J.-J. DAUDIN, "STUDY ON THE HOMOGENEITY OF A POPULATION OF YEASTS ISOLATED FROM CAMEMBERT CHEESES," ANNALES DE MICROBIOLOGIE, vol. A134, iss. 3, pp. 399-409, 1983.

[1980, article | www]J.-J. DAUDIN, "PARTIAL ASSOCIATION MEASURES AND AN APPLICATION TO QUALITATIVE REGRESSION," BIOMETRIKA, vol. 67, iss. 3, pp. 581-590, 1980.

[1979, article | www]J.-J. DAUDIN, "ITERATIVE ALGORITHM FOR ANALYSIS OF VARIANCE," INTERNATIONAL JOURNAL OF BIO-MEDICAL COMPUTING, vol. 10, iss. 6, pp. 507-518, 1979.

 

INV

Conférences données sur invitation du Comité scientifique d'un un congrès national ou international

[2008, inproceedings | www]J. J. Daudin, "Mixnet : Mixture Model for random networks." 2008.

[2007, inproceedings | www]J. J. Daudin, "Introduction to Networks from a Statistical point of view." 2007.

ACT

Communications avec actes dans un congrès international ou national

[2010, inproceedings | www | pdf]J. J. Daudin, "Statistical models for clustering networks, a review," in Proc. Journées MARAMI 2010, Toulouse, 2010.

[2010, inproceedings | www | pdf]S. Li-Thiao-Te, J. J. Daudin, and S. Robin, "Mixture models of truncated data for estimating the number of species," in Proc. COMPSTAT’2010, Paris, France, 2010.

[2010, inproceedings | pdf]A. Daudin J.J.and Celisse, "Consistance des estimateurs variationnels pour un modèle de graphe aléatoire," in Proc. 42èmes Journées de Statistique, Marseille, France, 2010.

[2010, inproceedings | www]J. J. Daudin, "Properties of variational estimates of a mixture model for random graphs," in Proc. Satellite meeting of ECCS'10 (European Conference on Complex Systems), Lisbon, Portugal, 2010.

[2009, inproceedings | www]J. J. Daudin, "Modèles statistiques pour les graphes aléatoires hétérogènes, application aux réseaux biologiques et sociaux," in Proc. 41èmes Journées de Statistique, Bordeaux, France, 2009.

[2008, inproceedings | pdf]J. Aubert, M. Martin-Magniette, A. Elftieh S. Bar-Hen, J. Renou, and J. Daudin, "Lowess extension to normalize three dyes cDNA microarray experiments." 2008.

[2005, inproceedings | www]F. Picard, S. Robin, E. Lebarbier, and J. J. Daudin, "A segmentation/clustering problem for the analysis of array CGH data," , Brest, France, 2005.

AFF

Communications par affiche dans un congrès international ou national

[2011, inproceedings]J. Aubert and J.-D. Daudin, "On the use of the negative binomial regression model for comparing differential expression or abundance with NGS data." 2011.

[2008, inproceedings]A. Urbain, E. Lebarbier, J. J. Daudin, H. Hofte, and G. Mouille, "Chemical imaging of root growth using Fourier Transformation Infra-Red spectroscopy." 2008.

[2007, inproceedings | www]J. J. Daudin, J. Aubert, N. Mansouri, G. Chaouat, O. Sandra, and N. Coqué, "Statistical analysis for identifying differentially expressed genes in microarrays data, an overview." 2007.

OS

Ouvrages scientifiques

[2015, book | www]Daudin, J.-J. Le modèle linéaire et ses extensions - Modèle linéaire général, modèle linéaire généralisé, modèle mixte, plans d'expériences (Niveau C). Technosup - Agronomie. FRA : Edition Ellipses, 336 p.

[2002, book | www]J. Daudin and C. Duby, Techniques mathématiques pour l’industrie agroalimentaire, Editions TEC&DOC ed., Paris: , 2002.

[1998, book | www]J. Daudin, S. Robin, and C. Vuillet, Statistique inférentielle : idées, démarche exemples, Presses Universitaires de Rennes ed., Société Française de Statistique, 1998.

[1996, book | www]J. Daudin and C. Tapiéro, Les outils et le contrôle de la qualité, PIQ poche ed., Economica, 1996.

[1995, book | www]J. Daudin, Norme NF-X06-031 : les cartes de contrôle, AFNOR, 1995.

[1988, book | www]J. Boussard and J. Daudin, La programmation linéaire dans les modèles de production, Masson, 1988.

[1988, book | www]R. Tomassone, M. Danzart, J. Daudin, and J. Masson, Discrimination et classement, Masson, 1988.

AP

Autres publications

[2011, techreport | www]A. Channarond, J. J. Daudin, and S. Robin, "Classification and estimation in the Stochastic Block Model based on the empirical degrees," arXiv2011.

[2011, techreport | www]A. Celisse, J. J. Daudin, and L. Pierre, "Consistency of maximum-likelihood and variational estimators in the Stochastic Block Model," arXiv2011.

[2009, techreport | www]J.-J. Daudin and L. Pierre, "Ideal-type model for random networks," SSB, 22, 2009.

[2007, techreport | www]J.-J. Daudin, F. Picard, and S. Robin, "Mixture model for random graphs : a variational approach," SSB, 4, 2007.

[2007, techreport | www]S. Robin, A. Bar-Hen, and J.-J. Daudin, "A semi-parametric approach for mixture models: Application to local FDR estimation," SSB, 3, 2007.

[2006, techreport | www]F. Picard, J.-J. Daudin, S. Schbath, and S. Robin, "Assessing the exceptionality of network motifs," SSB, 1, 2006.

[2006, techreport | www]J.-J. Daudin, F. Picard, and S. Robin, "A mixture model for random graphs," INRIA, 5840, 2006.

[2004, techreport | www]F. Picard, S. Robin, M. Lavielle, C. Vaisse, G. Celeux, and J. J. Daudin, "A statistical approach for CGH microarray data analysis," INRIA, 5139, 2004.