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Publications de Marie-Laure Martin-Magniette



Articles dans des revues internationales ou nationales avec comité de lecture répertoriées dans les bases de données

[2013, article | www]C. Houel, M.-L. Martin-Magniette, S. D. Nicolas, T. Lacombe, L. Le Cunff, D. Franck, L. Torregrosa, G. Conéjéro, S. Lalet, P. This, and A.-F. Adam-Blondon, "Genetic variability of berry size in the grapevine (Vitis vinifera L.)," Australian Journal of Grape and Wine Research, vol. 19, iss. 2, pp. 208-220, 2013.

[2013, article]S. Volant, C. Bérard, M.-L. Martin-Magniette, and S. Robin, "Hidden Markov Models with mixtures as emission distributions," Stat. Comput., 2013.

[2012, article | www]C. Maugis-Rabusseau, M.-L. Martin-Magniette, and S. Pelletier, "SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values," Journal de la Société Française de Statistiques, vol. 153, iss. 2, 2012.

[2012, article | www]F. Cubillos, J. Yansouni, H. Khalili, S. Balzergue, S. Elftieh, M.-L. Martin-Magniette, Y. Serrand, L. Lepiniec, S. Baud, B. Dubreucq, J.-P. Renou, C. Camilleri, and O. Loudet, "Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures," BMC Genomics, vol. 13, iss. 1, p. 117, 2012.

[2012, article | www]D. Rengel, S. Arribat, P. Maury, M.-L. Martin-Magniette, T. Hourlier, M. Laporte, D. Varès, S. Carrère, P. Grieu, S. Balzergue, J. Gouzy, P. Vincourt, and N. B. Langlade, "A Gene-Phenotype Network Based on Genetic Variability for Drought Responses Reveals Key Physiological Processes in Controlled and Natural Environments," PLoS ONE, vol. 7, iss. 10, p. 45249, 2012.

[2012, article | www]Moreau M, Azzopardi M, Clément G, Dobrenel T, Marchive C, Renne C, Martin-Magniette ML, Taconnat L, Renou JP, Robaglia C, and M. C., "Mutations in the Arabidopsis Homolog of LST8/G?L, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days.," The Plant Cell Online, 2012.

[2012, article | www]M. C. Reymond, G. Brunoud, A. Chauvet, J. F. Martínez-Garcia, M.-L. Martin-Magniette, F. Monéger, and C. P. Scutt, "A Light-Regulated Genetic Module Was Recruited to Carpel Development in Arabidopsis following a Structural Change to SPATULA," The Plant Cell Online, 2012.

[2012, article | www]S. Volant, M.-L. Martin-Magniette, and S. Robin, "Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency," Computational Statistics & Data Analysis, 2012.

[2011, article | www]A. Dubois, A. Remay, O. Raymond, S. Balzergue, A. Chauvet, M. Maene, Y. Pécrix, S.-H. Yang, J. Jeauffre, T. Thouroude, V. Boltz, M.-L. Martin-Magniette, S. Janczarski, F. Legeai, J.-P. Renou, P. Vergne, M. Le Bris, F. Foucher, and M. Bendahmane, "Genomic Approach to Study Floral Development Genes in Rosa sp.," PLoS ONE, vol. 6, iss. 12, p. 28455, 2011.

[2011, article | www]M. Abdelkarim, N. Vintonenko, A. Starzec, A. Robles, J. Aubert, M.-L. Martin, S. Mourah, M.-P. Podgorniak, S. Rodrigues-Ferreira, C. Nahmias, P.-O. Couraud, C. Doliger, O. Sainte-Catherine, N. Peyri, L. Chen, J. Mariau, M. Etienne, G.-Y. Perret, M. Crepin, J.-L. Poyet, A.-M. Khatib, and M. Di Benedetto, "Invading Basement Membrane Matrix Is Sufficient for MDA-MB-231 Breast Cancer Cells to Develop a Stable <italic>In Vivo</italic> Metastatic Phenotype," PLoS ONE, vol. 6, iss. 8, p. 23334, 2011.

[2011, article | www]C. Bérard, M. L. Martin-Magniette, V. Brunaud, S. Aubourg, and S. Robin, "Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome.," Statistical Applications in Genetics and Molecular Biology, vol. 10:1, iss. 50, 2011.

[2011, article | www]A. M. B. Moghaddam, F. Roudier, M. Seifert, C. Bérard, M. L. Martin-Magniette, R. K. Ashtiyani, A. Houben, V. Colot, and M. F. Mette, "Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids," The Plant Journal, 2011.

[2011, article | www]G. Celeux, M.-L. Martin-Magniette, C. Maugis, and A. E. Raftery, "Witten, D. M., and Tibshirani, R. (2010), ``A Framework for Feature Selection in Clustering, Journal of the American Statistical Association, 105,713-726.," JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, vol. 106, iss. 493, p. 383, 2011.

[2011, article | www]P. Faivre Rampant, I. Lesur, C. Boussardon, F. Bitton, M.-L. Martin-Magniette, C. Bodenes, G. Le Provost, H. Berges, S. Fluch, A. Kremer, and C. Plomion, "Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome," BMC Genomics, vol. 12, iss. 1, p. 292, 2011.

[2011, article | www]C. Maugis, G. Celeux, and M.-L. Martin-Magniette, "Variable selection in model-based discriminant analysis," Journal of Multivariate Analysis, 2011.

[2011, article | www]F. Roudier, I. Ahmed, C. Bérard, A. Sarazin, T. Mary-Huard, and al., "Integrative epigenomic mapping defines four main chromatin states in Arabidopsis," The EMBO Journal, vol. 30, pp. 1928-1938, 2011.

[2010, article | www]D. Cohen, M.-B. Bogeat-Triboulot, E. Tisserant, S. Balzergue, M.-L. Martin-Magniette, G. Lelandais, N. Ningre, J.-P. Renou, J.-P. Tamby, D. Le Thiec, and I. Hummel, "Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes," BMC Genomics, vol. 11, p. 630, 2010.

[2010, article | www]S. Chadi, R. Young, S. Le Guillou, G. Tilly, F. Bitton, M.-L. Martin-Magniette, L. Soubigou-Taconnat, S. Balzergue, M. Vilotte, C. Peyre, B. Passet, V. Beringue, J.-P. Renou, F. Le Provost, H. Laude, and J.-L. Vilotte, "Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse," BMC Genomics, vol. 11, iss. 1, p. 448, 2010.

[2009, article | www]S. Elis, E. Blesbois, I. Couty, S. Balzergue, M.-L. Martin-Magniette, and F. Batellier, "Identification of germinal disk region derived genes potentially involved in hen fertility," Mol. Reprod. Dev., vol. 76, iss. 11, pp. 1043-1055, 2009.

[2009, article | www]M.-L. Martin-Magniette and M.-L. Taupin, "Semi-parametric estimation of the hazard function in a model with covariate measurement error.," ESAIM Probability and Statistics, vol. 13, pp. 87-114, 2009.

[2009, article | www]C. Maugis, G. Celeux, and M.-L. Martin-Magniette, "Variable Selection for Clustering with Gaussian Mixture Models," Biometrics, vol. 65, pp. 701-709, 2009.

[2009, article | www]C. Maugis, G. Celeux, and L. M. Martin-Magniette, "Variable selection in model-based clustering: A general variable role modeling," Comput. Stat. Data Anal., vol. 53, iss. 11, pp. 3872-3882, 2009.

[2009, article | www]V. H. Teixeira, R. Olaso, M.-L. Martin-Magniette, S. Lasbleiz, L. Jacq, C. R. Oliveira, P. Hilliquin, I. Gut, F. Cornelis, and E. Petit-Teixeira, "Transcriptome Analysis Describing New Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis Patients," PLoS ONE, vol. 4, iss. 8, p. 6803, 2009.

[2008, article | www]M. Benhamed, M. Martin-Magniette, L. Taconnat, F. Bitton, C. Servet, R. De Clercq, B. De Meyer, C. Buysschaert, S. Rombauts, R. Villarroel-Mandiola, S. Aubourg, J. Beynon, R. Bhalerao, G. Coupland, W. Gruissem, F. Menke, B. Weisshaar, J. Renou, D. Zhou, and P. Hilson, "Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.," PLANT JOURNAL, vol. 56, iss. 3, pp. 493-504, 2008.

[2008, article | www]S. Gagnot, J.-P. Tamby, M.-L. Martin-Magniette, F. Bitton, L. Taconnat, S. Balzergue, S. Aubourg, J.-P. Renou, L. Alain, and B. Véronique, "CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform," Nucleic Acids Research, vol. 36, p. d986-d990, 2008.

[2008, article | www]S. Ruffel, S. Freixes, S. Balzergue, P. Tillard, C. Jeudy, M.-L. Martin-Magniette, M. J. van der Merwe, K. Kakar, J. Gouzy, A. R. Fernie, M. Udvardi, C. Salon, A. Gojon, and M. Lepetit, "Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula," Plant Physiol., vol. 146, iss. 4, pp. 2020-2035, 2008.

[2008, article | www]M. Cossegal, P. Chambrier, S. Mbelo, S. Balzergue, M.-L. Martin-Magniette, A. Moing, C. Deborde, V. Guyon, P. Perez, and P. Rogowsky, "Transcriptional and Metabolic Adjustments in ADP-Glucose Pyrophosphorylase-Deficient bt2 Maize Kernels," Plant Physiol., vol. 146, iss. 4, pp. 1553-1570, 2008.

[2008, article | www]M. Navajas, A. Migeon, C. Alaux, M. Martin-Magniette, G. Robinson, J. Evans, S. Cros-Arteil, D. Crauser, and Y. Le Conte, "Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection," BMC Genomics, vol. 9, iss. 1, p. 301, 2008.

[2008, article | www]S. Elis, F. Batellier, I. Couty, S. Balzergue, M.-L. Martin-Magniette, P. Monget, E. Blesbois, and M. Govoroun, "Search for the genes involved in oocyte maturation and early embryo development in the hen," BMC Genomics, vol. 9, iss. 1, p. 110, 2008.

[2008, article | www]M.-L. Martin-Magniette, J. Aubert, A. Bar-Hen, S. Elftieh, F. Magniette, J.-P. Renou, and J.-J. Daudin, "Normalization for triple-target microarray experiments," BMC BIOINFORMATICS, vol. 9, iss. 216, 2008.

[2008, article | www]M.-L. Martin-Magniette, T. Mary-Huard, C. Bérard, and S. Robin, "ChIPmix: Mixture model of regressions for two-color ChIP-chip analysis," Bioinformatics, vol. 24, pp. 181-86, 2008.

[2007, article | www]F. Turck, F. Roudier, S. Farrona, M.-L. Martin-Magniette, E. Guillaume, N. Buisine, S. Gagnot, R. A. Martienssen, G. Coupland, and V. Colot, "Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27," PLoS Genet, vol. 3, iss. 6, p. 86, 2007.

[2007, article | www]F. Ramel, C. Sulmon, F. Cabello-Hurtado, L. Taconnat, M.-L. Martin-Magniette, J.-P. Renou, A. El Amrani, I. Couee, and G. Gouesbet, "Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance," BMC Genomics, vol. 8, iss. 1, p. 450, 2007.

[2007, article | www]S. Aubourg, M.-L. Martin-Magniette, V. Brunaud, L. Taconnat, F. Bitton, S. Balzergue, P. Jullien, M. Ingouff, V. Thareau, T. Schiex, A. Lecharny, and J.-P. Renou, "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome," BMC Genomics, vol. 8, iss. 1, p. 401, 2007.

[2006, article | www]S. Herbette, L. Taconnat, V. Hugouvieux, M.-L. Martin-Magniette, S. Cuine, P. Auroy, P. Richaud, C. Forestier, J. Bourguignon, J.-P. Renou, A. Vavasseur, and N. Leonhart, "Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots.," Biochimie, vol. 11, pp. 1751-1765, 2006.

[2005, article | www]M.-L. Martin-Magniette, J. Aubert, E. Cabannes, and J.-J. Daudin, "Answer to the comments of K. Dobbin, J. Shih and R. Simon on the paper `Evaluation of the gene-specific dye-bias in cDNA microarray experiments'," Bioinformatics, vol. 21, iss. 14, pp. 3065-3065, 2005.

[2005, article | www]M. Giral, J. M. Nguyen, G. Karam, M. Kessler, B. H. de Ligny, M. Buchler, F. Bayle, C. Meyer, Y. Foucher, M.-L. Martin, P. Daguin, and J. P. Soulillou, "Impact of Graft Mass on the Clinical Outcome of Kidney Transplants," J Am Soc Nephrol, vol. 16, iss. 1, pp. 261-268, 2005.

[2005, article | www]F. Jammes, P. Lecomte, J. de Almeida-Engler, F. Bitton, M.-L. Martin-Magniette, J.-P. Renou, P. Abad, and B. Favery, "Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis.," Plant Journal, vol. 44, iss. 3, pp. 447-458, 2005.

[2005, article | www]M.-L. Martin-Magniette, "Non-parametric estimation of the hazard function using a model selection method: estimation of cancer death in Hiroshima A-bomb survivors.," JRSS, serie C, vol. 54, pp. 31-50, 2005.

[2005, article | www]M.-L. Martin-Magniette, J. Aubert, E. Cabannes, and J.-J. Daudin, "Evaluation of the gene-specific dye bias in cDNA microarray experiments," Bioinformatics, vol. 21, iss. 9, pp. 1995-2000, 2005.

[2004, article | www]C. Lurin, C. Andres, S. Aubourg, M. Bellaoui, F. Bitton, C. Bruyere, M. Caboche, C. Debast, J. Gualberto, B. Hoffmann, A. Lecharny, M. Le Ret, M.-L. Martin-Magniette, H. Mireau, N. Peeters, J.-P. Renou, B. Szurek, L. Taconnat, and I. Small, "Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis," Plant Cell, vol. 16, iss. 8, pp. 2089-2103, 2004.


Articles dans des revues avec comité de lecture non répertoriées dans des bases de données internationales

[2009, article | www]C. Bérard, M.-L. Martin-Magniette, A. To, F. Roudier, V. Colot, and S. Robin, "Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée.," La revue de MODULAD, vol. 40, pp. 53-68, 2009.

[2009, article | www]C. Maugis, M.-L. Martin-Magniette, P. J. Tamby, P. J. Renou, A. Lecharny, S. Aubourg, and G. Celeux, "Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins.," La revue de MODULAD, vol. 40, pp. 69-80, 2009.


Communications avec actes dans un congrès international ou national

[2008, inproceedings | pdf]J. Aubert, M. Martin-Magniette, A. Elftieh S. Bar-Hen, J. Renou, and J. Daudin, "Lowess extension to normalize three dyes cDNA microarray experiments." 2008.


Communications par affiche dans un congrès international ou national

[2009, inproceedings]C. Bérard, M.-L. Martin-Magniette, F. Roudier, V. Colot, and S. Robin, "Bidimensionnal Gaussian mixture for IP/IP ChIP-chip data analysis." 2009.

[2008, inproceedings]C. Bérard, F. Roudier, S. Aubourg, V. Colot, M.-L. Martin-Magniette, M. Caboche, A. Lecharny, S. Robin, T. Mary-Huard, F. Samson, S. Balzergue, J.-P. Renou, and C. Lurin, "Design and exploitation of a versatile Arabidopsis whole-genome Tiling-array." 2008.


Chapitres d'ouvrages

[2004, inbook | www]M.-L. Martin-Magniette and S. Robin, "Informatique pour l'analyse du transcriptome," , Boulicaut, J.-F. and Gandrillon, O. ed., Hermès, 2004.


Autres publications

[2008, techreport | www]F. Picard, M.-L. Martin-Magniette, S. Gagnot, V. Brunaud, J. Aubert, V. Gendrel, S. Robin, M. Caboche, A. Lecharny, and V. Colot, "MixThres: mixture models to define a hybridization threshold in DNA microarray experiments," SSB, 20, 2008.