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Observatoire de Recherche en Environnement Petits Fleuves Côtiers


Publications scientifiques


Acou A., Rivot E., van Gils J.A., Legault A., Ysnel F., Feunteun E., (2011). Habitat carrying capacity is reached for European eel in a small coastal catchment: ecological evidence and implications for eel stock management. Freshwater Biology, accepted.

Bal G, Rivot E, Prévost E, Piou C, Baglinière JL. (2011). Effect of water temperature and density of salmonid juveniles on growth of young-of-the-year Atlantic salmon Salmo salar L. Journal of Fish Biology, doi:10.1111/j.1095-8649.2011.02902.x

Brun, M. ; Abraham, C. ; Jarry, M. ; Dumas, J. ; Lange, F. ; Prévost, E. (2011). Estimating an homogeneous series of a population abundance indicator despite changes in data collection procedure : a hierarchical Bayesian modelling approach. Ecological Modelling. 2011, 222 (15) : 1069-1079

Bureau du Colombier, S.; Bolliet, V.; Lambert, P.; Bardonnet, A (2011). Metabolic loss of mass in glass eels at different salinities according to their propensity to migrate. Estuarine, Coastal and Shelf Science. 2011, 93 (1) : 1-6 

Delcourt, J.; Ylieff, M.; Bolliet, V. (2011). Video tracking in the extreme : a new possibility for tracking nocturnal underwater transparent animals with elastomer tags. Behavior Research Methods. 2011, 43 (2) : 590-600 

Forget G, Bernez I. (2011). Assessment of the success of headwater restoration through the vegetation diversity analysis of four Oir river’s tributaries (Normandy, France). Procedia Environmental science 9, 47-53.

Gascuel-Odoux C., Aurousseau P., Doray T., Squividant H., Macary F., Uny D., Grimaldi C. (2011) Incorporating landscape features in a plot tree structure to represent surface flow connectivity in rural catchments. Hydrological Processes. 25, 3625–3636

Grimardias D., Merchermek N., Chébaud J., Gaudin P., Jarry M., Beall E., (2011). Effects of habitat on the reproductive success of sneakers and on interactions among spawners in Atlantic salmon (Salmo salar L.). Journal of Fish Biology, in press.

Nikolic N., Baglinière J-L., Rigaud C., Gardes C., Masquilier M-L., Taverny C., (2011). Bibliometric analysis of diadromous fish research from 1970s to 2010 - a case study of seven species. Scientometrics, DOI 10.1007/s11192-011-0422-x

Perrier C, Daverat F., Evanno G., Pécheyran C., Baglinière J-L., Roussel J-M., (2011). Coupling genetic and otolith microchemistry analyses to identify river-born fish with hatchery pedigrees in stocked Atlantic salmon populations. Canadian Journal of Fisheries and Aquatic Sciences, in press.

Perrier C. , Grandjean F., Le Gentil J. , Cherbonnel C. and Evanno G.(2011). A species-specific microsatellite marker to discriminate European Atlantic salmon, brown trout, and their hybrids. Conservation Genet Resour (2011) 3:131–133

Perrier C.,Guyomard R., Baglinière J-L. and Evanno G. (2011). Determinants of hierarchical genetic structure in Atlantic salmon populations: environmental factors vs.anthropogenic influences. Molecular Ecology (2011) 20, 4231–4245

Tentelier, C.; Piou, C. (2011). Obstacles to migration constrain nest distribution of Atlantic salmon. Ecology of Freshwater Fish. 2011, 20 (3) : 400-408


Buoro M.; Prévost E.; Gimenez O. (2010). Investigating evolutioary trade-offs in wild populations of atlantic salmon (salmo salar): Incorporating detection probabilities and individualities heterogeneity. Evolution, 64: 2629-2642.

Castillo A. G. F., Beall E., Moran P., Martinez J.L., Garcia-Vazquez E., (2010). Indirect benefits for female salmon from mating with brown trout. Journal of Heredity 101 (4), 461-468. doi:10.1093/jhered/esq042

Chevalet C., Nikolic N. (2010). Distribution of coalescence times and distances between microsatellite alleles with changing effective population size. Theoretical Population Biology 2010, vol. 77, no3, pp. 152-163

Grimardias D., Merchermek N., Chébaud J., Gaudin P., Jarry M., Beall E., (2010). Effects of habitat on the reproductive success of sneakers and on interactions among spawners in Atlantic salmon (Salmo salar L.). Journal of Fish Biology. Journal of Fish Biology Volume 77, Issue 10, pages 2460–2466. DOI: 10.1111/j.1095-8649.2010.02808.x"

Grimardias D., Merchermek N., Manicki A., Garnier J., Gaudin P., Jarry M., Beall E., (2010). Reproductive success of mature male parr of Atlantic salmon (Salmo salar) in a small river, the Nivelle: influence of shelters. Ecology of Freshwater Fish. Doi: 10.1111/j.1600-0633.2010.00421.x

Lasne E, Sabatié M-R, Evanno G. Communal spawning of brook and river lampreys (Lampetra planeri and L. fluviatilis) is common in the Oir River (France). Ecology of Freshwater Fish 2010.
Lasne E., Sabatié M.R, Tremblay J., Beaulatond L., Roussel J.M (2010). A new sampling technique for larval lamprey population assessment in small river catchments. Fish. Res.(2010),doi:10.1016/j.fishres.2010.06.011

Marmonier P., Piscar C.t, Sarriquet P.M., Azam D.and Chauvet E. 2010 : Relevance of large litter bag burial for the study of leaf breakdown in the hyporheic zone. Hydrobiologia Volume 641, Number 1, 203-214, DOI: 10.1007

Nikolic, N., J. R. A. Butler, J. L. Bagliniere, R. Laughton, I. A. G. McMyn and C. Chevalet (2010). An examination of genetic diversity and effective population size in Atlantic salmon populations. Genetics Research 91(6): 395-412. http://dx.doi.org/10.1017/s0016672309990346

Papaïx J., Cubaynes, S., Buoro, M., Charmantier A., Perret P. and O. Gimenez(2010). Combining capture-recapture and pedigree data to estimate heritability of survival. Journal of Evolutionary Biology 23(10) : 2176-2184.

Régnier T, Bolliet V, Labonne J, Gaudin P, (2010). Assessing maternal effects on metabolic rate dynamics along early development in brown trout (Salmo trutta): an individual-based approach. J. Comp. Physiol. B, 180: 25–31. DOI 10.1007/s00360-009-0385-x

Tentelier C. & Piou C. (2010) Obstacles to migration constrain nest distribution of Atlantic salmon. Ecology of Freshwater Fish. DOI: 10.1111/j.1600-0633.2010.00452.x

Valiente A. G., Beall E., Garcia-Vazquez E., (2010). Population genetics of south European salmon under global change. Global Change Biology 16 (1), 36-47, doi: 10.1111/j.1365-2486.2009.01922.x


Aymes JC, Rives J (2009) Detection efficiency of multiplexed Passive Integrated Transponder antennas is influenced by environmental conditions and fish swimming behaviour. Ecol. Freshw. Fish18: 507-513.

Bardonnet A.; Labonne J.; Lafitte J. & Garnier J. (2009). Relationships between individual behaviour and morphometry under different experimental conditions of temperature and feeding in European glass eels (Anguilla anguilla). Knowledge and Management of Aquatic Ecosystems 290-291: 02, 13 p.

Dauphin, G.; Prévost, E.; Adams, C.E. & Boylan, P. (2009). A Bayesian approach to estimating Atlantic salmon fry densities using a rapid sampling technique. Fisheries Management and Ecology

Forget G., Bernez I., (2009). Suivi de l'émergence des pousses de ligneux en vue d'une restauration passive des rives du ruisseau de la Vallée-Aux-Berges (Basse Normandie). Ingenieries, n° spécial en "Ecologie de la restauration", 31-39. http://dx.doi.org/10.1016/j.ecoenv.2008.08.001

Labonne, J.; Augery, M.; Parade, M.; Brinkert, S.; Prevost, P.; Héland, M. & Beall, E. (2009). Female preference for male body size in brown trout, Salmo trutta: is big still fashionable? Animal Behaviour 77, 129-137.

Nikolic, N., J. R. A. Butler, J. L. Bagliniere, R. Laughton, I. A. G. McMyn and C. Chevalet (2009). An examination of genetic diversity and effective population size in Atlantic salmon populations. Genetics Research 91(6): 395-412. http://dx.doi.org/10.1017/s0016672309990346

Rivot E., Porcher J-P., Riera P., Perrier C., Jouanin C., Baglinière J-L & Roussel J-M. (2009). Climate Change may have Affected Growth and Life History in Atlantic Salmon Juveniles over the Past 30 Years. American Fisheries Society Symposium 69, 855-857


Acolas, M. L., J. M. Roussel and J. L. Bagliniere (2008). Linking migratory patterns and diet to reproductive traits in female brown trout (Salmo trutta L.) by means of stable isotope analysis on ova. Ecology of Freshwater Fish 17(3): 382-393. http://dx.doi.org/10.1111/j.1600-0633.2007.00290.x

Benyahya, B., St-Hilaire, A., Ouarda, T.B.M.J., Bobée, B. & Dumas, J. (2008). Comparison of non-parametric and parametric water temperature models on the Nivelle River, France. Hydrological Sciences 53 (3), 640-655

Bolliet, V. & Labonne, J. (2008). Individual patterns of rhythmic swimming activity in Anguilla anguilla glass eels synchronised to water current reversal. Journal of Experimental Marine Biology and Ecology 362 (2), 125-130.

Castillo, A.G.F., Ayllon, F., Moran, P., Izquierdo, J.I., Martinez, J.L., Beall, E. & Garcia-Vasquez, E. (2008). Interspecific hybridization and introgression are associated with stock transfers in salmonids. Aquaculture 278 (1-4), 31-36.

Lelong, A., Bolliet, V., Bancel, D. & Gaudin, P. (2008). Detection of elemental composition and caloric value variability at individual level in newly emerged brown trout Salmo trutta L. Journal of Fish Biology 72 (10), 2695-2699.

Rivot, E., E. Prevost, A. Cuzol, J. L. Bagliniere and E. Parent (2008). Hierarchical Bayesian modelling with habitat and time covariates for estimating riverine fish population size by successive removal method. Canadian Journal of Fisheries and Aquatic Sciences 65(1): 117-133. Juin Juillet 2008

Wilson M., Acolas M. L., Begout M. L., Madsen P. T. & Wahlberg M. (2008). Allis shad (Alosa alosa) exhibit an intensity-graded behavioral response when exposed to ultrasound. Journal of the Acoustical Society of America 124(4): EL243-EL247 http://dx.doi.org/10.1121/1.2960899


Acolas, M. L., J. M. Roussel, J. M. Lebel and J. L. Bagliniere (2007). Laboratory experiment on survival, growth and tag retention following PIT injection into the body cavity of juvenile brown trout (Salmo trutta). Fisheries Research 86(2-3): 280-284. http://dx.doi.org/10.1016/j.fishres.2007.05.011

Bolliet, V.,; Lambert, P., Rives, J. & Bardonnet, A. (2007). Rhythmic swimming activity in Anguilla anguilla glass eels : synchronisation to water current reversal under laboratory conditions. Journal of Experimental Marine Biology and Ecology 344 (1), 54-66.

Castillo, A.G.F., Beall, E., Moran, P., Martinez, J.L., Ayllon, F. & Garcia-Vasquez, E. (2007). Introgression in the genus Salmo via allotriploids. Molecular Ecology 16 (8), 1741-1748.

Cucherousset, J., J. M. Paillisson and J. M. Roussel (2007). "Using PIT technology to study the fate of hatchery-reared YOY northern pike released into shallow vegetated areas." Fisheries Research 85(1-2): 159-164. http://dx.doi.org/10.1016/j.fishres.2007.01.011

Dumas, J., Bassenave, J.G., Jarry, M., Barriere, L. & Glise, S. (2007). Effects of fish farm effluents on egg-to-fry development and survival of brown trout in artificial redds. Journal of Fish Biology 70 (6), 1734-1758.

Dumas, J., Olaizola, M. & Barriere, L. (2007). Survie embryonnaire du saumon atlantique (Salmo salar L.) dans un cours d’eau du sud de son aire de répartition, la Nivelle. Bulletin Français de la Pêche et de la Pisciculture 384 (1), 39-60.

Lefrancois, J., C. Grimaldi, C. Gascuel-Odoux and N. Gilliet (2007). Suspended sediment and discharge relationships to identify bank degradation as a main sediment source on small agricultural catchments. Hydrological Processes 21(21): 2923-2933. http://dx.doi.org/doi:10.1002/hyp.6509

Robinet T, Acou A., Boury P. & Feunten E. (2007). Concepts for characterizing spawning biomass of the European eel (Anguilla Anguilla) in different catchments. Vie et Milieu – Life and Environment 57, 201-211.


Bardonnet A., Poncin P., Roussel J-M. (2006). Brown trout fry move inshore at night: a choice for water depth or velocity? Ecology of Freshwater Fish 15: 309-314. http://dx.doi.org/10.1111/j.1600-0633.2006.00160.x

Charles K, Roussel J-M., Lebel J-M., Baglinière J-L., Ombredane D. (2006). Genetic differentiation between anadromous and freshwater resident brown trout (Salmo trutta L.): insights obtained from stable isotope analysis. Ecology of Freshwater Fish 15: 255-263. http://dx.doi.org/10.1111/j.1600-0633.2006.00149.x

Cucherousset J., Ombredane D., Baglinière J-L. (2006). Linking juvenile growth and migration behaviour of brown trout (Salmo trutta) using individual PIT-tagging. Cahiers de Biologie Marine 47 : 73-78.

Daniel H., Bernez I., Haury J. (2006). Relationships between macrophytic vegetation and physical features of river habitats: the need for a morphological approach. Hydrobiologia 270: 11-17. http://dx.doi.org/10.1007/s10750-006-0156-6

Haury J., Peltre M.-C., Trémolières M., Barbe J., Thiébaut G., Bernez I., Daniel H., Chatenet P., Haan-Archipof G., Muller S., Dutartre A., Laplace-Treyture C., Cazaubon A., Lambert-Servien E. (2006). A new method to assess water trophy and organic pollution - the Macrophyte Biological Index for Rivers (IBMR): its application to different types of river and pollution. Hydrobiologia 270: 153-158. http://dx.doi.org/10.1007/s10750-006-0175-3

J. Dumas, S. Marty (2006). A new method to evaluate egg-to-fry survival in salmonids, trials with Atlantic salmon. Journal of Fish Biology. Volume 68, Issue 1, Page 284-304, Jan 2006. http://dx.doi.org/10.1111/j.0022-1112.2006.00907.x

Linnansaari T., Roussel J-M., Cunjak R.A., Halleraker J.H.(2006). Efficacy and accuracy of portable PIT-antennae when tracking juvenile Atlantic salmon (Salmo salar L.) in ice covered streams. Hydrobiologia 2007, 582 (1) : 281-287. http://dx.doi.org/10.1007/s10750-006-0546-9

Rifflart R., Marchand F., Rivot E., Baglinière J.L. (2006). Scale reading validation for estimating age from tagged fish recapture in a brown trout (Salmo trutta) population. Fisheries Research 78: 380-384. http://dx.doi.org/10.1016/j.fishres.2005.11.018

Rivot E., Prévost E., Porcher J.P., Baglinière J.L. (2006). A dynamic metapopulation model for the Atlantic salmon (Salmo salar). Consequences for management. Cahiers de Biologie Marine 47: 113-114.


Baglinière, J-L., Marchand, F., Vauclin, V. (2005). Interannual changes in recruitment of the Atlantic salmon (Salmo salar) population in the River Oir (Lower Normandy, France): relationships with spawners and instream habitat. ICES Journal of Marine Science, 62, 695-707. http://dx.doi.org/10.1016/j.icesjms.2005.02.008

Charles K., R. Guyomard, B. Hoyheim, D. Ombredane, J-L. Baglinière (2005). Lack of genetic differenciation between anadromous and non-anadromous sympatric trout in a Normandy population. Aquatic Living Ressources 18: 65-69. http://dx.doi.org/10.1051/alr:2005006

Cucherousset J., J-M. Roussel, R. Keeler, R.A. Cunjak, R. Stump (2005). The use of two new portable 12-mm PIT-tag detectors to track small fish in shallow streams. North American Journal of Fisheries Management 25: 270-274. http://dx.doi.org/10.1577/M04-053.1

Cucherousset J., Ombredane D., Katia Charles, Marchand F., Baglinière J-L. (2005). A continuum of life history tactics in a brown trout (Salmo trutta) population. Canadian Journal of Fisheries and Aquatic Sciences 62: 1600-1610. http://dx.doi.org/10.1139/F05-057

Daniel H, Bernez I, Haury J, Le Coeur D (2005). The ability of aquatic macrophytes to indicate fish farm pollution in two salmon rivers. Hydrobiologia 551:183-192

Vilizzi L., Copp G.H., Roussel J-M. (2005). Assessing temporal variation and autocorrelation in fish habitat use. Folia Zoologica 54: 432-442. http://dx.doi.org/10.1007/s10750-005-4460-3


Bernez I, Daniel H, Haury J, Ferreira MT (2004). Combined effects of environmental factors and regulation on macrophyte vegetation along three rivers in Western France. River Research and Applications 20:43-59. http://dx.doi.org/10.1002/rra.718

Charles K, J-M. Roussel, R.A. Cunjak (2004). Estimating the contribution of sympatric anadromous and freshwater-resident brown trout to juvenile production. Marine and Freshwater Research 55: 185-191. http://dx.doi.org/10.1071/MF03173

Ó Maoiléidigh N., McGinnity, P., Prévost E., Potter E.C.E., Gargan P., Crozier W., Mills P., Roche W. (2004). Application of pre-fishery abundance modelling and Bayesian hierarchical stock and recruitment analysis. Setting to the provision of precautionary catch advice for Irish salmon Salmo salar L. fisheries. ICES Journal of Marine Science 61: 1370-1378.

Rivot, E., Prévost, E., Parent, E., Baglinière, J.L. (2004). A Bayesian state-space modelling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data. Ecological Modelling, 179: 463-485.

Vilizzi L., G.H. Copp, J-M. Roussel (2004). Assessing variation in suitability curves and electivity profiles in temporal studies of fish habitat use. River Research and Applications 20: 605-618. http://dx.doi.org/10.1002/rra.767